Miyakogusa Predicted Gene
- chr4.CM0617.490.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr4.CM0617.490.nd - phase: 0
(1776 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC005451A_C01 KMC005451A_c01 159 1e-38
KMC001263A_C02 KMC001263A_c02 58 3e-08
>KMC005451A_C01 KMC005451A_c01
Length = 606
Score = 159 bits (80), Expect = 1e-38
Identities = 287/356 (80%)
Strand = Plus / Minus
Query: 1399 gcaatctttgctagtggaagcccatttgatccagttgaaattaagggcaaagtttattat 1458
||||| |||||||||||||||||||||||||| ||| || | || ||||||||| |
Sbjct: 578 gcaatttttgctagtggaagcccatttgatcctgttaaatatggaggaaaagtttatgct 519
Query: 1459 tctggccagtccaacaatgcttacatattcccaggctttggtttgggtttggtaatgtca 1518
|||| ||| ||||||||||||||||||| || |||||||||||||||||| | || ||
Sbjct: 518 cctggacaggccaacaatgcttacatatttcctggctttggtttgggtttgatcatctct 459
Query: 1519 ggagcaatccgagtccatgatgatatgcttctagcagcatcggaagcattggctaaacaa 1578
|| |||||||| || | |||||| ||||| | ||||| || ||||| |||||| ||||
Sbjct: 458 ggggcaatccgcgtgcgtgatgagatgctcttggcagcttctgaagctttggctgcacaa 399
Query: 1579 gtttcagaggagaactacaagaagggtttgatttacccacctttcactgatatcagaaaa 1638
|| ||| |||||||||| | ||||| |||||||||| |||||| | ||||||||||
Sbjct: 398 gtatcacaggagaactatgacaagggactgatttaccctcctttcccaaatatcagaaag 339
Query: 1639 atttcggctgatatagctgcaagtgttgctgccaaggcatatgaactaggtttggctaca 1698
|| || || |||| ||||| |||||||| || || | ||| ||||| ||| ||||| |
Sbjct: 338 atatcagcccatattgctgctagtgttgcagcgaaagtatacgaacttggtctggcttct 279
Query: 1699 catattcctcgtcctcaggatcttgtcaagtatgctgagagttgtatgtatagccc 1754
||| | ||||| ||| ||||||||||||| ||||| || ||||| ||||| |||||
Sbjct: 278 catctacctcgacctaaggatcttgtcaaatatgcagaaagttgcatgtacagccc 223
>KMC001263A_C02 KMC001263A_c02
Length = 730
Score = 58.0 bits (29), Expect = 3e-08
Identities = 98/121 (80%)
Strand = Plus / Minus
Query: 1460 ctggccagtccaacaatgcttacatattcccaggctttggtttgggtttggtaatgtcag 1519
|||||||| |||||||||| ||||||||||| || || ||| | |||||| | ||||| |
Sbjct: 701 ctggccaggccaacaatgcatacatattccctggattcggtctaggtttgattatgtctg 642
Query: 1520 gagcaatccgagtccatgatgatatgcttctagcagcatcggaagcattggctaaacaag 1579
| | || ||||| |||||||| ||||||| || || ||||| || |||||| ||||||
Sbjct: 641 ggacgattcgagtgcatgatgacctgcttctggctgcctcggaggctttggctgaacaag 582
Query: 1580 t 1580
|
Sbjct: 581 t 581
Score = 50.1 bits (25), Expect = 8e-06
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 1630 atcagaaaaatttcggctgatatagctgcaagtgttgctgccaaggcatatgaactaggt 1689
|||||||| ||||| || |||||||||| | |||||||| ||||| |||||||||||
Sbjct: 531 atcagaaagatttcagcacatatagctgccaaagttgctgctaaggcttatgaactaggg 472
Query: 1690 ttggc 1694
|||||
Sbjct: 471 ttggc 467
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5994
Number of Sequences: 8469
Number of extensions: 5994
Number of successful extensions: 1608
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1602
Number of HSP's gapped (non-prelim): 6
length of query: 1776
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1759
effective length of database: 5,020,801
effective search space: 8831588959
effective search space used: 8831588959
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)