Miyakogusa Predicted Gene

chr4.CM0333.40.nd

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr4.CM0333.40.nd - phase: 0 
         (2796 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC000104A_C01 KMC000104A_c01                                         767   0.0  

>KMC000104A_C01 KMC000104A_c01
          Length = 604

 Score =  767 bits (387), Expect = 0.0
 Identities = 393/395 (99%)
 Strand = Plus / Minus

                                                                        
Query: 2402 tgcatctcagaaagcatgtcacacaagaggatgtggacatggcaattcgtgttctacttg 2461
            |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 604  tgcatctcagtaagcatgtcacacaagaggatgtggacatggccattcgtgttctacttg 545

                                                                        
Query: 2462 attcattcatttccactcaaaagtttggggtacagaaagcgctgcagaagagcttccgga 2521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544  attcattcatttccactcaaaagtttggggtacagaaagcgctgcagaagagcttccgga 485

                                                                        
Query: 2522 agtatataactttcaagaaggactacaatgaattactccattatcttctccgcgagcttg 2581
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484  agtatataactttcaagaaggactacaatgaattactccattatcttctccgcgagcttg 425

                                                                        
Query: 2582 taaagaatgctttgcattttgaagaaattgtttctggatctgcttcaggtctaacgcatg 2641
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424  taaagaatgctttgcattttgaagaaattgtttctggatctgcttcaggtctaacgcatg 365

                                                                        
Query: 2642 tagatgtcaaactagatgatctcgtcaacaaggctcaggatcatgaaatatatgatttga 2701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364  tagatgtcaaactagatgatctcgtcaacaaggctcaggatcatgaaatatatgatttga 305

                                                                        
Query: 2702 aacccttcttcagtagtagcctcttctctagtggcaattttgcattagatgaagaacgag 2761
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304  aacccttcttcagtagtagcctcttctctagtggcaattttgcattagatgaagaacgag 245

                                               
Query: 2762 gagtgattagggtattgctccacaatgaaatttga 2796
            |||||||||||||||||||||||||||||||||||
Sbjct: 244  gagtgattagggtattgctccacaatgaaatttga 210


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,793
Number of Sequences: 8469
Number of extensions: 10793
Number of successful extensions: 3304
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3302
Number of HSP's gapped (non-prelim): 2
length of query: 2796
length of database: 5,164,774
effective HSP length: 17
effective length of query: 2779
effective length of database: 5,020,801
effective search space: 13952805979
effective search space used: 13952805979
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)