Miyakogusa Predicted Gene

chr4.CM0333.280.nc
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr4.CM0333.280.nc + phase: 0 
         (1650 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC005436A_C01 KMC005436A_c01                                          84   5e-16

>KMC005436A_C01 KMC005436A_c01
          Length = 866

 Score = 83.8 bits (42), Expect = 5e-16
 Identities = 123/150 (82%)
 Strand = Plus / Plus

                                                                       
Query: 436 atcatagtttcagctgtgacttcctttaagatacataatgacaagtcaccattttctggg 495
           ||||||||||||||  ||||||| || || | ||||| ||||   ||  |||||||||| 
Sbjct: 706 atcatagtttcagcaatgacttctttgaaaaaacatactgactcatcggcattttctgga 765

                                                                       
Query: 496 aaatccatactttacttaaatcggcatcagactgaagaatggaaaggctggatgcaggtt 555
           | |  |||||||||| | ||||||||||| || |||||||||||||| ||||||||||| 
Sbjct: 766 agaagcatactttaccttaatcggcatcaaacagaagaatggaaaggatggatgcaggtc 825

                                         
Query: 556 ttgtttttgatgtaccattactttgctgca 585
            | ||| | ||||||||||| |||||||||
Sbjct: 826 ctctttctaatgtaccattattttgctgca 855


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5933
Number of Sequences: 8469
Number of extensions: 5933
Number of successful extensions: 1598
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1596
Number of HSP's gapped (non-prelim): 1
length of query: 1650
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1633
effective length of database: 5,020,801
effective search space: 8198968033
effective search space used: 8198968033
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)