Miyakogusa Predicted Gene
- chr4.CM0234.40.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr4.CM0234.40.nc + phase: 0
(924 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC002835A_C01 KMC002835A_c01 676 0.0
>KMC002835A_C01 KMC002835A_c01
Length = 775
Score = 676 bits (341), Expect = 0.0
Identities = 341/341 (100%)
Strand = Plus / Minus
Query: 584 gagaaaatactgatggacctaacgatgagggaaaactcaacactgctgatgaagagttac 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gagaaaatactgatggacctaacgatgagggaaaactcaacactgctgatgaagagttac 716
Query: 644 aagcctcaaaagagaaagttgatgacaaaggagctgagggttctgatgctgttcagaaca 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 aagcctcaaaagagaaagttgatgacaaaggagctgagggttctgatgctgttcagaaca 656
Query: 704 aagatgatggctctggggaaccagagaaatcagaagcagcccctactactgagcaaaaga 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aagatgatggctctggggaaccagagaaatcagaagcagcccctactactgagcaaaaga 596
Query: 764 ttgaagtggaaggagagaacaaagaggaacatgacagaggcattcacgagtctggagaaa 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttgaagtggaaggagagaacaaagaggaacatgacagaggcattcacgagtctggagaaa 536
Query: 824 tcaaggacaaagaaggagcaaaggtgaatgatgaagaacattttaaggttcatgatataa 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tcaaggacaaagaaggagcaaaggtgaatgatgaagaacattttaaggttcatgatataa 476
Query: 884 accagaaaactgaatcaggggtgactgtgaatggaagttga 924
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 accagaaaactgaatcaggggtgactgtgaatggaagttga 435
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4798
Number of Sequences: 8469
Number of extensions: 4798
Number of successful extensions: 1324
Number of sequences better than 1.0e-03: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1323
Number of HSP's gapped (non-prelim): 1
length of query: 924
length of database: 5,164,774
effective HSP length: 16
effective length of query: 908
effective length of database: 5,029,270
effective search space: 4566577160
effective search space used: 4566577160
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)