Miyakogusa Predicted Gene

chr4.CM0229.490.nc
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr4.CM0229.490.nc + phase: 0 
         (1392 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC004473A_C01 KMC004473A_c01                                         607   e-173

>KMC004473A_C01 KMC004473A_c01
          Length = 598

 Score =  607 bits (306), Expect = e-173
 Identities = 306/306 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1087 attgaagaaaggcgagctaataatgacagggccagatatccatcaggacgcggtggatac 1146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598  attgaagaaaggcgagctaataatgacagggccagatatccatcaggacgcggtggatac 539

                                                                        
Query: 1147 cgaaatgacagaaatgatagcttcaggggccgtggcaacttcggtggtggcaactttggt 1206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538  cgaaatgacagaaatgatagcttcaggggccgtggcaacttcggtggtggcaactttggt 479

                                                                        
Query: 1207 ggtggccgtggtggtggctacaacggcaggaatgattttgagaggcgaaatgagttctct 1266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478  ggtggccgtggtggtggctacaacggcaggaatgattttgagaggcgaaatgagttctct 419

                                                                        
Query: 1267 ggccgaccacgaggtggcaataatatgggacgtaacaatggagaaactgcgccaaggagt 1326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418  ggccgaccacgaggtggcaataatatgggacgtaacaatggagaaactgcgccaaggagt 359

                                                                        
Query: 1327 tatcagaatggtcagactggtcagaatggaggaagagtcgctcgccaaccggtgaaagct 1386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358  tatcagaatggtcagactggtcagaatggaggaagagtcgctcgccaaccggtgaaagct 299

                  
Query: 1387 cagtaa 1392
            ||||||
Sbjct: 298  cagtaa 293


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5126
Number of Sequences: 8469
Number of extensions: 5126
Number of successful extensions: 1436
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1433
Number of HSP's gapped (non-prelim): 3
length of query: 1392
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1375
effective length of database: 5,020,801
effective search space: 6903601375
effective search space used: 6903601375
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)