Miyakogusa Predicted Gene
- chr4.CM0229.400.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr4.CM0229.400.nc + phase: 0
(870 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC003130A_C02 KMC003130A_c02 1102 0.0
KMC000648A_C02 KMC000648A_c02 609 e-174
>KMC003130A_C02 KMC003130A_c02
Length = 781
Score = 1102 bits (556), Expect = 0.0
Identities = 579/586 (98%), Gaps = 3/586 (0%)
Strand = Plus / Plus
Query: 1 atggaggggaattccggcggtggtggtggtggcggaagcggcggtggaggttctgatgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 atggaggggaattccggcggtggtggtggtggcggaagcggcggtggaggttctgatgtg 254
Query: 61 gagcttctgtgcaagacgttgcaggtggagcacaagctgttctacttcgatctgaaggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gagcttctgtgcaagacgttgcaggtggagcacaagctgttctacttcgatctgaaggag 314
Query: 121 aatcctcgcggtcgctacctcaagatttcggagaagacttctgctacgaggtccaccatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aatcctcgcggtcgctacctcaagatttcggagaagacttctgctacgaggtccaccatc 374
Query: 181 atcgttccgttctccggcatttcctggtttctcgatctcttcaattactatgttaactct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atcgttccgttctccggcatttcctggtttctcgatctcttcaattactatgttaactct 434
Query: 241 gacgatcaagacctcttcagtaaggaactgcagcttgacaccaaggttttttacttcgac 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gacgatcaagacctcttcagtaaggaactgcagcttgacaccaaggttttttacttcgag 494
Query: 301 attggggagaataggaggggccgcttcttaaaggtgtcggaggcttctgtaagcagaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 attggggagaataggaggggccgcttcttaaaggtgtcggaggcttctgtaagcagaaac 554
Query: 361 cgtagcactataattgttcctgcaggaagctccagggacgaagggtgggctgcattcaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cgtagcactataattgttcctgcaggaagctccagggacgaagggtgggctgcattcaga 614
Query: 421 aacattttggcagagattaatgaggcatcaaggcttttcattatgcccaat---cagcaa 477
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 615 aacatttaggcagagattaatgaggcatcaaggcttttcattatgcccaatcagcagcaa 674
Query: 478 aattctgaatcctcagagcgtcttgtcggactttcggatgatgttggtgctggcttcata 537
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 675 aattctgaatcctcagagcgtcttgtcggactttcggatgatgttggggctggcttcata 734
Query: 538 tctggtcatagtacacaacctgcaacctcttctgaattgaatgtgg 583
|||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 735 tctggtcatagtacacaacctgcaacctcttctgaattgagtgtgg 780
>KMC000648A_C02 KMC000648A_c02
Length = 688
Score = 609 bits (307), Expect = e-174
Identities = 310/311 (99%)
Strand = Plus / Minus
Query: 560 caacctcttctgaattgaatgtggacaggtctgttgatttaccagctcaggatgaaattg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 caacctcttctgaattgaatgtggacaggtctgttgatttaccagctcaggatgaaattg 629
Query: 620 gaaacttgggggtctcaaaagttatcagggctgatcaaaaaagattcttctttgatcttg 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gaaacttgggggtctcaaaagttatcagggctgatcaaaaaagattcttctttgatcttg 569
Query: 680 ggagcaataacaggggtcatttcttaagaatatctgaggttgcaggttctgatcgttcct 739
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggagccataacaggggtcatttcttaagaatatctgaggttgcaggttctgatcgttcct 509
Query: 740 ccatcatccttcctctgtcagggctcaagcagtttcatgagatcgttggtcactttgttg 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ccatcatccttcctctgtcagggctcaagcagtttcatgagatcgttggtcactttgttg 449
Query: 800 aaatcaccaaggaccgaatcgagggaatggcagttgcaaatgtccgcacagttgatcccc 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaatcaccaaggaccgaatcgagggaatggcagttgcaaatgtccgcacagttgatcccc 389
Query: 860 ctcaaagatga 870
|||||||||||
Sbjct: 388 ctcaaagatga 378
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3230
Number of Sequences: 8469
Number of extensions: 3230
Number of successful extensions: 1011
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1005
Number of HSP's gapped (non-prelim): 5
length of query: 870
length of database: 5,164,774
effective HSP length: 16
effective length of query: 854
effective length of database: 5,029,270
effective search space: 4294996580
effective search space used: 4294996580
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)