Miyakogusa Predicted Gene
- chr4.CM0179.450.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr4.CM0179.450.nd - phase: 1 /partial
(1367 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC010709A_C01 KMC010709A_c01 168 9e-42
KMC000279A_C01 KMC000279A_c01 167 4e-41
>KMC010709A_C01 KMC010709A_c01
Length = 490
Score = 168 bits (85), Expect = 9e-42
Identities = 87/88 (98%)
Strand = Plus / Minus
Query: 1280 attgcaggtaattacatcttctgcatctgggcaagctgtggtggattcccaagcatctga 1339
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 490 attgcaggtaattacatcttctgcatctggncaagctgtggtggattcccaagcatctga 431
Query: 1340 tgttgaagcctgccggagtgtgctcaag 1367
||||||||||||||||||||||||||||
Sbjct: 430 tgttgaagcctgccggagtgtgctcaag 403
>KMC000279A_C01 KMC000279A_c01
Length = 733
Score = 167 bits (84), Expect = 4e-41
Identities = 123/136 (90%)
Strand = Plus / Minus
Query: 1086 gacatagggactggatgtttgtcgtttggttctacgctagatgatattggcatagattta 1145
|||||||||| ||| |||||||| ||||||||| ||| ||||| |||||||||||||||
Sbjct: 678 gacatagggagtggctgtttgtcatttggttctcagctggatgacattggcatagattta 619
Query: 1146 cccaaagcaccaagtaattttggtgagataataggaaaactaattttggctgggggtttg 1205
||||||||||| ||||||||||||||||| ||||| ||| |||||||||||||||| |||
Sbjct: 618 cccaaagcaccgagtaattttggtgagatcatagggaaagtaattttggctggggggttg 559
Query: 1206 gatttcaaggtggtga 1221
||||| ||||||||||
Sbjct: 558 gattttaaggtggtga 543
Score = 60.0 bits (30), Expect = 6e-09
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 1298 ttctgcatctgggcaagctgtggtggattcccaagcatctgatgttgaagcctgccggag 1357
||||||||||||||||||||| |||| || ||| ||||||| |||| ||||||| |||
Sbjct: 469 ttctgcatctgggcaagctgtattggagtctcaaaaatctgatattgaggcctgccagag 410
Query: 1358 tgtgctcaag 1367
| ||||||||
Sbjct: 409 tctgctcaag 400
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4207
Number of Sequences: 8469
Number of extensions: 4207
Number of successful extensions: 1165
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1161
Number of HSP's gapped (non-prelim): 3
length of query: 1367
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1350
effective length of database: 5,020,801
effective search space: 6778081350
effective search space used: 6778081350
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)