Miyakogusa Predicted Gene
- chr4.CM0172.160.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr4.CM0172.160.nc - phase: 0
(1758 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC000777A_C01 KMC000777A_c01 607 e-173
KMC003409A_C01 KMC003409A_c01 295 8e-80
>KMC000777A_C01 KMC000777A_c01
Length = 523
Score = 607 bits (306), Expect = e-173
Identities = 306/306 (100%)
Strand = Plus / Plus
Query: 1 atgcggccacccgttgccagccgcgtcggtccggttccctacggtgctccatatgcggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 atgcggccacccgttgccagccgcgtcggtccggttccctacggtgctccatatgcggcc 277
Query: 61 cctgtacccagcggtttcggacccgccgcacacgctaacccgaatccgccgtttgttcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cctgtacccagcggtttcggacccgccgcacacgctaacccgaatccgccgtttgttcct 337
Query: 121 ccttctgggggattctctgttggccgaggcggtggatttggtggtagagggggtgatagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ccttctgggggattctctgttggccgaggcggtggatttggtggtagagggggtgatagg 397
Query: 181 aaatatgacacgggtcgttatagcggtggtggtggtggaagaggtcgtggcggtggtagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aaatatgacacgggtcgttatagcggtggtggtggtggaagaggtcgtggcggtggtagt 457
Query: 241 tttaggggtggaggcagaggtgggagaggcggtgggtttggaggtagacatggtggtggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tttaggggtggaggcagaggtgggagaggcggtgggtttggaggtagacatggtggtggg 517
Query: 301 tcttct 306
||||||
Sbjct: 518 tcttct 523
>KMC003409A_C01 KMC003409A_c01
Length = 453
Score = 295 bits (149), Expect = 8e-80
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 1610 tgtctgttatggctcgatctgctggttctggtccacttggatccggaggaagctttcgct 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tgtctgttatggctcgatctgctggttctggtccacttggatccggaggaagctttcgct 394
Query: 1670 caagaggacgaggaggctatggcaataggggttcaatatcaggatccaatgccattcctg 1729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 caagaggacgaggaggctatggcaataggggttcaatatcaggatccaatgccattcctg 334
Query: 1730 ttggtatgaaaaggccttggccgtattag 1758
|||||||||||||||||||||||||||||
Sbjct: 333 ttggtatgaaaaggccttggccgtattag 305
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5715
Number of Sequences: 8469
Number of extensions: 5715
Number of successful extensions: 1709
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1707
Number of HSP's gapped (non-prelim): 2
length of query: 1758
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1741
effective length of database: 5,020,801
effective search space: 8741214541
effective search space used: 8741214541
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)