Miyakogusa Predicted Gene
- chr4.CM0170.10.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr4.CM0170.10.nd - phase: 0
(1917 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC000505A_C01 KMC000505A_c01 165 2e-40
KMC004903A_C01 KMC004903A_c01 52 2e-06
>KMC000505A_C01 KMC000505A_c01
Length = 661
Score = 165 bits (83), Expect = 2e-40
Identities = 184/218 (84%)
Strand = Plus / Minus
Query: 1492 tggagttttgctgcaattgaaggaataggttggggttgggctggtgtaatatggttatat 1551
|||||||||||||| |||||||| || || |||| |||||||||||| | ||| | |||
Sbjct: 657 tggagttttgctgctattgaagggattggatgggnttgggctggtgttgtttggctttat 598
Query: 1552 aacataatcttctacatcccccttgatttcatcaagtttttaacccgctatgctttgagt 1611
||| | |||||||| ||||| ||||||||||||||||| | || || ||||| ||||||
Sbjct: 597 aacctcatcttctatatcccacttgatttcatcaagttcattactcgatatgccttgagt 538
Query: 1612 ggaagagcttgggatcttgttattgagcaaaggattgctttcacaagacaaaaggacttt 1671
|| || |||||||||||||||||||| |||||||||||||| ||||| ||||||| |||
Sbjct: 537 ggcagggcttgggatcttgttattgaacaaaggattgcttttacaaggaaaaaggatttt 478
Query: 1672 gggaaagaacaaagggagcttcaatgggcacatgcaca 1709
|| || ||| || | || ||| ||||||||||||||||
Sbjct: 477 ggaaaggaagaacgcgaacttaaatgggcacatgcaca 440
Score = 85.7 bits (43), Expect = 1e-16
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 1777 aatcaaatggcagaagaagctaaaaggagagctgaaattgcaaggttgagagaacttcat 1836
||||| ||||| ||||| |||||||| |||| |||||| |||| |||||||||| |||
Sbjct: 369 aatcagatggctgaagaggctaaaagacgagcagaaattacaagactgagagaactgcat 310
Query: 1837 acactgaaaggtcatgtagaatcagttgtgaggttgaaggggctcgacatagacacaatt 1896
|| ||||| || ||||| || ||||| || ||| ||||||| || ||||| ||||| ||
Sbjct: 309 actctgaagggccatgttgagtcagtggttaggctgaagggacttgacattgacaccata 250
Query: 1897 cagcaagcatacacagtct 1915
|||||||||||||| ||||
Sbjct: 249 cagcaagcatacactgtct 231
>KMC004903A_C01 KMC004903A_c01
Length = 347
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 1072 tttccaccttttatggtgctgattattgccatcctaaatgatggta 1117
|||||||| || ||||| ||||| ||||| ||||||||||||||||
Sbjct: 246 tttccacccttcatggtcctgatcattgcaatcctaaatgatggta 291
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6676
Number of Sequences: 8469
Number of extensions: 6676
Number of successful extensions: 1822
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1817
Number of HSP's gapped (non-prelim): 5
length of query: 1917
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1900
effective length of database: 5,020,801
effective search space: 9539521900
effective search space used: 9539521900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)