Miyakogusa Predicted Gene
- chr4.CM0087.70.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr4.CM0087.70.nd - phase: 0
(2730 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC000228A_C01 KMC000228A_c01 1540 0.0
KMC000899A_C01 KMC000899A_c01 712 0.0
>KMC000228A_C01 KMC000228A_c01
Length = 1014
Score = 1540 bits (777), Expect = 0.0
Identities = 799/804 (99%), Gaps = 3/804 (0%)
Strand = Plus / Plus
Query: 1 atgaatcctgacaaattcacccacaagacaaatgaagctcttgctggggctcatgaactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atgaatcctgacaaattcacccacaagacaaatgaagctcttgctggggctcatgaactg 273
Query: 61 gcaatgagttctggacatgctcagatgactcctctgcacctagcaagcaccttgatttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gcaatgagttctggacatgctcagatgactcctctgcacctagcaagcaccttgatttct 333
Query: 121 gaccctaatggcattttcttccaagcaatttccaattccagtggagaagaatctgcacgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gaccctaatggcattttcttccaagcaatttccaattccagtggagaagaatctgcacgt 393
Query: 181 gctgtggagagggttttgaaccaggctttgaagaagttaccttctcagtcccctcctcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gctgtggagagggttttgaaccaggctttgaagaagttaccttctcagtcccctcctcct 453
Query: 241 gatgagattccggcgagcacgacgcttattaaggccattcggagagcacaggcggcgcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gatgagattccggcgagcacgacgcttattaaggccattcggagagcacaggcggcgcag 513
Query: 301 aagtccaggggtgatacacatttagcagtggatcagttgattttgggcattcttgaggat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aagtccaggggtgatacacatttagcagtggatcagttgattttgggcattcttgaggat 573
Query: 361 tctcaaattggtgacttgttgaaggaagctggtgtggctgctgctaaggttaaatcagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tctcaaattggtgacttgttgaaggaagctggtgtggctgctgctaaggttaaatcagag 633
Query: 421 cttgacaagcttcgtgggaaggtagggaagaaggttgagagtgcatctggtgatactact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 cttgacaagcttcgtgggaaggtagggaagaaggttgagagtgcatctggtgatactact 693
Query: 481 tttcaggctttgaagacttatgggagagaccttgtggagcaagcagggaagcttgatcca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tttcaggctttgaagacttatgggagagaccttgtggagcaagcagggaagcttgatcca 753
Query: 541 gtaattgggcgtgatgaggagataagaagggttgtgaggattttgtcaaggaggactaag 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gttattgggcgtgatgaggagataagaagggttgtgaggattttgtcaaggaggactaag 813
Query: 601 aataacccggttctgattggagagcctggtgttggtaaaactgctgtggtggaaggcttg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 aataacccggttctgattggagagcctggtgttggtaaaactgctgtggtggaaggcttg 873
Query: 661 gcacagaggattgttagaggggatgttcccagcaatctttctgatgttaggcttattgca 720
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 874 gcacagaggattgttagaggggatgttcccagc-atctttctgatgttaggcttattgca 932
Query: 721 ttggacatgggtgctttggttgctggtgctaagtataggggagaatttgaggagaggttg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 ttggacatgggtgctttggttgctggtgctaagtataggggagaatttgaggagaggt-- 990
Query: 781 aaggcagttttgaaagaagtggag 804
|||||||||||||||||||||||
Sbjct: 991 gaggcagttttgaaagaagtggag 1014
>KMC000899A_C01 KMC000899A_c01
Length = 760
Score = 712 bits (359), Expect = 0.0
Identities = 379/383 (98%), Gaps = 2/383 (0%)
Strand = Plus / Minus
Query: 2350 gttgctagtagacttgctgagagaggaatagccatggcagtaacagatgcagcattagat 2409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gttgctagtagacttgctgagagaggaatagccatggcagtaacagatgcagcattagat 701
Query: 2410 tatatacttgctgagagctatgatcctgtttatggtgctagaccaattaggaggtggctt 2469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tatatacttgctgagagctatgatcctgtttatggtgctagaccaattaggaggtggctt 641
Query: 2470 gagaggaaagtggtgacagagctttccagaatgcttataagggatgaaattgatgagaac 2529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gagaggaaagtggtgacagagctttccagaatgcttataagggatgaaattgatgagaac 581
Query: 2530 tcaacagtgtacat-cgatgctggcaccaagggtagtgagttggtctaccgtgtagagaa 2588
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tcaacagtgtacatgcgatgctggcaccaagggtagtgagttggtctaccgtgtagagaa 521
Query: 2589 gaatggtgggctggttaatgctgcaa-ctggtcagaagtctgatatcttgattcagatac 2647
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 520 gaatggtgggctggttaatgctgcaagctggtcagaagtctgatatcttgattcagatac 461
Query: 2648 ctaatggaccaaaaagtgatgctgctcaagctgtgaagaagatgaggattgaggaaattg 2707
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 460 ctaatggacccaaaagtgatgctgctccagctgtgaagaagatgaggattgaggaaattg 401
Query: 2708 atgatggtgagatggaagagtga 2730
|||||||||||||||||||||||
Sbjct: 400 atgatggtgagatggaagagtga 378
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,557
Number of Sequences: 8469
Number of extensions: 10557
Number of successful extensions: 2960
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2949
Number of HSP's gapped (non-prelim): 3
length of query: 2730
length of database: 5,164,774
effective HSP length: 17
effective length of query: 2713
effective length of database: 5,020,801
effective search space: 13621433113
effective search space used: 13621433113
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)