Miyakogusa Predicted Gene
- chr4.CM0079.170.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr4.CM0079.170.nc - phase: 0
(1338 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC010025A_C01 KMC010025A_c01 555 e-158
KMC003630A_C01 KMC003630A_c01 66 1e-10
>KMC010025A_C01 KMC010025A_c01
Length = 613
Score = 555 bits (280), Expect = e-158
Identities = 286/288 (99%)
Strand = Plus / Minus
Query: 1051 tttggtgatgttgtctctgtgaaaattccagtgggtaaagggtgtggtttcgttcaattt 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tttggtgatgttgtctctgtgaaaattccagtgggtaaagggtgtggtttcgttcaattt 554
Query: 1111 gctgacagaaagaatgcggaggaagcaattcacgcattgaatggaacagtgattgggaag 1170
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 553 gctgacagaaagaatgcggaggaaccaattcacgcattgaatggaacagtgattgggaag 494
Query: 1171 cagacagtgcgtctttcttggggccgcagtccaggaaataagcattggaggtctgattcc 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cagacagtgcgtctttcttggggccgcagtccaggaaataagcattggaggtctgattcc 434
Query: 1231 aacggcggccattacggtggtcagggttatggaggccatggatatggagcgagacagaat 1290
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gacggcggccattacggtggtcagggttatggaggccatggatatggagcgagacagaat 374
Query: 1291 caagatatgggtatgcatcctactgctgcaattcaaggtgcttcgtaa 1338
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 caagatatgggtatgcatcctactgctgcaattcaaggtgcttcgtaa 326
>KMC003630A_C01 KMC003630A_c01
Length = 537
Score = 65.9 bits (33), Expect = 1e-10
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 1162 attgggaagcagacagtgcgtctttcttggggccgcagtccaggaaataagca 1214
||||| ||||| ||||| ||||||||||||||||||| ||||| |||||||||
Sbjct: 481 attggaaagcaaacagttcgtctttcttggggccgcaatccagcaaataagca 429
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5069
Number of Sequences: 8469
Number of extensions: 5069
Number of successful extensions: 1698
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1696
Number of HSP's gapped (non-prelim): 2
length of query: 1338
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1321
effective length of database: 5,020,801
effective search space: 6632478121
effective search space used: 6632478121
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)