Miyakogusa Predicted Gene
- chr4.CM0042.2210.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr4.CM0042.2210.nc + phase: 0
(3021 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC000249A_C01 KMC000249A_c01 468 e-131
KMC000843A_C01 KMC000843A_c01 72 4e-12
KMC000148A_C01 KMC000148A_c01 44 8e-04
>KMC000249A_C01 KMC000249A_c01
Length = 558
Score = 468 bits (236), Expect = e-131
Identities = 249/252 (98%), Gaps = 1/252 (0%)
Strand = Plus / Minus
Query: 2771 ggggaggaatgaatccgatgcaagttgtcggtgctgtgggttttcaacatcgccgtcttg 2830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ggggaggaatgaatccgatgcaagttgtcggtgctgtgggttttcaacatcgccgtcttg 499
Query: 2831 acattccagatgatctggaccctgccgttgcaaacattatcagacaatgttggcatacag 2890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acattccagatgatctggaccctgccgttgcaaacattatcagacaatgttggcatacag 439
Query: 2891 atccaaagttgagaccttcttttgctgagatcatggctgcgctgaagccattgcagaagc 2950
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 438 atccaaacttgagaccttcttttgctgagatcatggctgcgctgaagccattgccgaagc 379
Query: 2951 caattacaggttctcaagtgcatagaccaagtgctcagttatcaagagtt-gctgaagac 3009
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 378 caattacaggttctcaagtgcatagaccaagtgctcagttatcaagagttggctgaagac 319
Query: 3010 cctgcaggatag 3021
||||||||||||
Sbjct: 318 cctgcaggatag 307
>KMC000843A_C01 KMC000843A_c01
Length = 553
Score = 71.9 bits (36), Expect = 4e-12
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 2876 aatgttggcatacagatccaaagttgagaccttcttttgctgagatcatggctgcgctga 2935
|||| ||||| |||||| |||||||||||||| |||||||||| || |||| | ||||
Sbjct: 538 aatgctggcagacagattcaaagttgagacctacttttgctgaaatattggcgactctga 479
Query: 2936 agccattgcagaagccaattacaggttctcaagtgc 2971
||||||| ||||||| |||| |||||||||||||
Sbjct: 478 agccattacagaagcaaattgttggttctcaagtgc 443
>KMC000148A_C01 KMC000148A_c01
Length = 817
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 2663 ctgagtggatggctccagaagt 2684
||||||||||||||||||||||
Sbjct: 785 ctgagtggatggctccagaagt 764
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,798
Number of Sequences: 8469
Number of extensions: 10798
Number of successful extensions: 3015
Number of sequences better than 1.0e-03: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3011
Number of HSP's gapped (non-prelim): 3
length of query: 3021
length of database: 5,164,774
effective HSP length: 17
effective length of query: 3004
effective length of database: 5,020,801
effective search space: 15082486204
effective search space used: 15082486204
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)