Miyakogusa Predicted Gene
- chr4.CM0042.1340.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr4.CM0042.1340.nc - phase: 0
(4449 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC002733A_C01 KMC002733A_c01 983 0.0
>KMC002733A_C01 KMC002733A_c01
Length = 822
Score = 983 bits (496), Expect = 0.0
Identities = 496/496 (100%)
Strand = Plus / Minus
Query: 3954 tggagctgttttaccacttgacattatttgtcttcacctagagaaggctggactggagag 4013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 tggagctgttttaccacttgacattatttgtcttcacctagagaaggctggactggagag 763
Query: 4014 gttaaattcaggggttgaacctgttggagatgaagatgttgcaagagcccttgtttctgc 4073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gttaaattcaggggttgaacctgttggagatgaagatgttgcaagagcccttgtttctgc 703
Query: 4074 ttgtaagggttcagctgaacctgttctgaatgcatatgatcaattgttatcaaacggggc 4133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ttgtaagggttcagctgaacctgttctgaatgcatatgatcaattgttatcaaacggggc 643
Query: 4134 tattttgccatccccaaatcttagattgcgtttattgagatctgttctagttatactccg 4193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tattttgccatccccaaatcttagattgcgtttattgagatctgttctagttatactccg 583
Query: 4194 tgagtgggctacgtctgtatattcccataggatgggtattggtgcctcgccttcccgagt 4253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tgagtgggctacgtctgtatattcccataggatgggtattggtgcctcgccttcccgagt 523
Query: 4254 actggagggaggattctcattggaacgcacagttgctagccaaggaattcgggacaagat 4313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 actggagggaggattctcattggaacgcacagttgctagccaaggaattcgggacaagat 463
Query: 4314 cactagtgcagcaaacaggtatatgactgaagtgaggagacttgcccttccacagaacca 4373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cactagtgcagcaaacaggtatatgactgaagtgaggagacttgcccttccacagaacca 403
Query: 4374 aacagaagttgtgtatcgaggctttagagaacttgaagagtcggttattagtcctcattc 4433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aacagaagttgtgtatcgaggctttagagaacttgaagagtcggttattagtcctcattc 343
Query: 4434 atttaatcgattttga 4449
||||||||||||||||
Sbjct: 342 atttaatcgattttga 327
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,956
Number of Sequences: 8469
Number of extensions: 14956
Number of successful extensions: 4345
Number of sequences better than 1.0e-03: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4343
Number of HSP's gapped (non-prelim): 2
length of query: 4449
length of database: 5,164,774
effective HSP length: 17
effective length of query: 4432
effective length of database: 5,020,801
effective search space: 22252190032
effective search space used: 22252190032
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 23 (46.1 bits)