Miyakogusa Predicted Gene
- chr4.CM0042.1300.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr4.CM0042.1300.nc + phase: 0
(960 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC011647A_C01 KMC011647A_c01 823 0.0
KMC004456A_C01 KMC004456A_c01 733 0.0
>KMC011647A_C01 KMC011647A_c01
Length = 567
Score = 823 bits (415), Expect = 0.0
Identities = 421/423 (99%)
Strand = Plus / Plus
Query: 1 atgtttttcgatgggtatggataccatggaacatcatttgagcagacatatcgatgttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 atgtttttcgatgggtatggataccatggaacatcatttgagcagacatatcgatgttac 204
Query: 61 cctgcttcttttattgaaaagccccaacttgaaagtggtgacaaaattataatgcctcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 cctgcttcttttattgaaaagccccaacttgaaagtggtgacaaaattataatgcctcca 264
Query: 121 tcagcccttgaccgtctagcatctctgcatattgattatccaatgttgtttgagctccgg 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 tcagcccttgaccgtctagcatctctgcatattgattatccaatgtggtttgagctccgg 324
Query: 181 aatgatgatgctgagcgggtttctcactgtggggtcctggagttcattgcagaggaaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgatgatgctgagcgggtttctcactgtggggtcctggagttcattgcagaggaaggc 384
Query: 241 atgatatacatgccatactggatgatggagaacatgcttttacaagagggggacattgta 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 atgatatacatgccatactggatgatggagaacatgcttttacaagagggggacatcgta 444
Query: 301 agagtgaaaaatgttacacttcccaagggaaaatacgttaagttacagccccacaccaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agagtgaaaaatgttacacttcccaagggaaaatacgttaagttacagccccacaccaaa 504
Query: 361 gatttcttagatatttccaatccaaaggctatcttagaaaccacattgaggaatttttcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatttcttagatatttccaatccaaaggctatcttagaaaccacattgaggaatttttcc 564
Query: 421 tgc 423
|||
Sbjct: 565 tgc 567
>KMC004456A_C01 KMC004456A_c01
Length = 568
Score = 733 bits (370), Expect = 0.0
Identities = 370/370 (100%)
Strand = Plus / Minus
Query: 591 ttctgcgggaaaggcaccagcggctgctcaggagacccctgctgaaactgaacccaagtt 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ttctgcgggaaaggcaccagcggctgctcaggagacccctgctgaaactgaacccaagtt 509
Query: 651 caacccatttactggtgctgggagacgcttggatggaaaacctttgaagtatgagccacc 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 caacccatttactggtgctgggagacgcttggatggaaaacctttgaagtatgagccacc 449
Query: 711 tccagtttcctcatcagggaccaaggacaagaaacctgatgttcctagtgtcaattcaca 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tccagtttcctcatcagggaccaaggacaagaaacctgatgttcctagtgtcaattcaca 389
Query: 771 atcatccacagcttcaagttcacaaagtagtgctaatcaaactcagggcaagcttgtgtt 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atcatccacagcttcaagttcacaaagtagtgctaatcaaactcagggcaagcttgtgtt 329
Query: 831 tgggtcaaatccagcccgcaccaaagatacaggaaaggcaaaagaggcagcaaaaccaga 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgggtcaaatccagcccgcaccaaagatacaggaaaggcaaaagaggcagcaaaaccaga 269
Query: 891 gccaccaaaagagaaagacgaacccaaatttcagcctttcagtgggaagaagtattcttt 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gccaccaaaagagaaagacgaacccaaatttcagcctttcagtgggaagaagtattcttt 209
Query: 951 aaggggttga 960
||||||||||
Sbjct: 208 aaggggttga 199
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3620
Number of Sequences: 8469
Number of extensions: 3620
Number of successful extensions: 1044
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 2
length of query: 960
length of database: 5,164,774
effective HSP length: 16
effective length of query: 944
effective length of database: 5,029,270
effective search space: 4747630880
effective search space used: 4747630880
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)