Miyakogusa Predicted Gene

chr4.CM0007.1100.nc
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr4.CM0007.1100.nc + phase: 0 /partial
         (1746 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC013048A_C01 KMC013048A_c01                                         426   e-119

>KMC013048A_C01 KMC013048A_c01
          Length = 613

 Score =  426 bits (215), Expect = e-119
 Identities = 226/231 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1516 aaatttgagtggaccagagagcagttcgaacaatgggcatctgacttagctgcgcggcac 1575
            |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 613  aaatttgagtggaccagagaccagttcgaacaatggncatctgacttagctgcgcggcac 554

                                                                        
Query: 1576 aattacagtgtggagttcagtggggttggtggttctgctgatgttgaaccaggctttgcc 1635
            |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||
Sbjct: 553  aattacagtgtggagttcagtgggnttgntgnttctgctgatgttgaaccaggctttgcc 494

                                                                        
Query: 1636 tcgcagattgctgtgtttaaaagggattggaaacttgaagatgacatcctgaagcaagct 1695
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493  tcgcagattgctgtgtttaaaagggattggaaacttgaagatgacatcctgaagcaagct 434

                                                               
Query: 1696 gatacagaacgccattataacgtaatatgggaatggaatagtataaacaac 1746
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433  gatacagaacgccattataacgtaatatgggaatggaatagtataaacaac 383


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6659
Number of Sequences: 8469
Number of extensions: 6659
Number of successful extensions: 1856
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1855
Number of HSP's gapped (non-prelim): 1
length of query: 1746
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1729
effective length of database: 5,020,801
effective search space: 8680964929
effective search space used: 8680964929
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)