Miyakogusa Predicted Gene
- chr4.CM0006.810.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr4.CM0006.810.nc - phase: 0
(5406 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC006461A_C01 KMC006461A_c01 765 0.0
KMC000799A_C01 KMC000799A_c01 84 2e-15
KMC005896A_C01 KMC005896A_c01 48 9e-05
>KMC006461A_C01 KMC006461A_c01
Length = 697
Score = 765 bits (386), Expect = 0.0
Identities = 388/389 (99%)
Strand = Plus / Minus
Query: 5018 tgccaacctctccaatatttgtggggaacaaggcaaagcggttgctcgagagggccgtgt 5077
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 697 tgccaacctctccaatatttgtggggaacaaggcaaagcggttgctcgagaggnccgtgt 638
Query: 5078 ggaatgatacagcattccttgcatcaatatatgtgatggactactcattgctggttggag 5137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ggaatgatacagcattccttgcatcaatatatgtgatggactactcattgctggttggag 578
Query: 5138 tggatgaggaaaaacatgagctggttttaggaattattgattttatgagacaatatacat 5197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tggatgaggaaaaacatgagctggttttaggaattattgattttatgagacaatatacat 518
Query: 5198 gggacaagcatcttgaatcttgggtgaagaccacaggcatccttggaggacccaagaatg 5257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gggacaagcatcttgaatcttgggtgaagaccacaggcatccttggaggacccaagaatg 458
Query: 5258 cttctccaactgttatatcaccacagcagtacaagaaacggttcaggaaagccatgagtt 5317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cttctccaactgttatatcaccacagcagtacaagaaacggttcaggaaagccatgagtt 398
Query: 5318 tatattttctcatggtgccagatcaatggtctcctccaggtttaaaccccactggctccc 5377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tatattttctcatggtgccagatcaatggtctcctccaggtttaaaccccactggctccc 338
Query: 5378 aatctgatcactgtgatgaaaattcctga 5406
|||||||||||||||||||||||||||||
Sbjct: 337 aatctgatcactgtgatgaaaattcctga 309
>KMC000799A_C01 KMC000799A_c01
Length = 542
Score = 83.8 bits (42), Expect = 2e-15
Identities = 130/158 (82%), Gaps = 1/158 (0%)
Strand = Plus / Minus
Query: 5108 atgtgatggactactcattgctggttggagtggatgaggaaaaacatgagctggttttag 5167
|||| ||||| |||||||||||||||||||||||||| || || |||| |||||||| |
Sbjct: 423 atgttatggattactcattgctggttggagtggatgaagagaagaatgaactggttttgg 364
Query: 5168 gaattattgattttatgagacaatatacatggg-acaagcatcttgaatcttgggtgaag 5226
| || ||||||| ||||| ||||| ||||||| |||||||| | || | |||||||||
Sbjct: 363 gcataattgattacatgaggcaatacacatgggcacaagcatttggagacatgggtgaag 304
Query: 5227 accacaggcatccttggaggacccaagaatgcttctcc 5264
| | || || ||||| || |||||||||||||||||
Sbjct: 303 gcatctgggatacttgggggtcccaagaatgcttctcc 266
>KMC005896A_C01 KMC005896A_c01
Length = 532
Score = 48.1 bits (24), Expect = 9e-05
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 5170 attattgattttatgagacaatatacatgggacaagcatcttgaatcttgggtgaagac 5228
|||||||||| | | || || |||||||||||| ||||||||||| | ||| |||||||
Sbjct: 517 attattgattatctcagncagtatacatgggaccagcatcttgaaacatggatgaagac 459
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,595
Number of Sequences: 8469
Number of extensions: 20595
Number of successful extensions: 5810
Number of sequences better than 1.0e-03: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5804
Number of HSP's gapped (non-prelim): 5
length of query: 5406
length of database: 5,164,774
effective HSP length: 18
effective length of query: 5388
effective length of database: 5,012,332
effective search space: 27006444816
effective search space used: 27006444816
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 23 (46.1 bits)