Miyakogusa Predicted Gene
- chr4.CM0006.640.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr4.CM0006.640.nd + phase: 0 /partial
(5286 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC010848A_C01 KMC010848A_c01 866 0.0
KMC000806A_C01 KMC000806A_c01 214 7e-55
>KMC010848A_C01 KMC010848A_c01
Length = 741
Score = 866 bits (437), Expect = 0.0
Identities = 440/441 (99%)
Strand = Plus / Minus
Query: 1 atggctggtggtgccgccggtggttttctcactcgagcattcgattctatgctcaaggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggctggtggtgccgccggtggttttctcactcgagcattcgattctatgctcaaggag 382
Query: 61 tgttctggcaagaagtttcctgaacttcagaaagctattcagaatttcacagatatcacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttctggcaagaagtttcctgaacttcagaaagctattcagaatttcacagatatcacg 322
Query: 121 aaagaggctagccagagaaagcagagtgagcctaatcaagctgcaccgtcacctgaatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagaggctagccagagaaagcagagtgagcctaatcaagctgcaccgtcacctgaatcc 262
Query: 181 gcgagtgcgaacgaaactgaagatggagcggtaactaaaccagaagcagatcagtcacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcgagtgcgaacgaaactgaagatggagcggtaactaaaccagaagcagatcagtcacat 202
Query: 241 aaggcttatagtggaaatatcacagttatcttagctaatgctgggaatgcgctcgaagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggcttatagtggaaatatcacagttatcttagctaatgctgggaatgcgctcgaagga 142
Query: 301 gctgatgcagaacttgttttaaatccgctccgtcttgcattcgagacgaagagcttgaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gctgatgcagaacttgttttaaatccgctccgtcttgcattcgagacgaagagcttgaaa 82
Query: 361 atcctagaaccggctttagattgtcttcataaacttattgcgtatgaccatttagaggga 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 81 atcctagaaccggctttagattgtcttcatatacttattgcgtatgaccatttagaggga 22
Query: 421 gatcctgggttagatggtggt 441
|||||||||||||||||||||
Sbjct: 21 gatcctgggttagatggtggt 1
>KMC000806A_C01 KMC000806A_c01
Length = 579
Score = 214 bits (108), Expect = 7e-55
Identities = 114/116 (98%)
Strand = Plus / Minus
Query: 5169 tcgtgctcctattattatcaaggtgatccaaagcatgtgttctatgaacagtaagatttt 5228
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 579 tcgtgctcctattattatcaaggtgatccaaagcatgtgttctatggacagtcagatttt 520
Query: 5229 cagaagacacctaagagaactctatcctttgctaactaaacttgtttgctgtgacc 5284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cagaagacacctaagagaactctatcctttgctaactaaacttgtttgctgtgacc 464
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,186
Number of Sequences: 8469
Number of extensions: 19186
Number of successful extensions: 5326
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5323
Number of HSP's gapped (non-prelim): 3
length of query: 5286
length of database: 5,164,774
effective HSP length: 18
effective length of query: 5268
effective length of database: 5,012,332
effective search space: 26404964976
effective search space used: 26404964976
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 23 (46.1 bits)