Miyakogusa Predicted Gene
- chr4.CM0006.350.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr4.CM0006.350.nc - phase: 0
(3693 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC000295A_C01 KMC000295A_c01 684 0.0
>KMC000295A_C01 KMC000295A_c01
Length = 631
Score = 684 bits (345), Expect = 0.0
Identities = 362/365 (99%), Gaps = 2/365 (0%)
Strand = Plus / Minus
Query: 3319 cctgatgacccagactatgatgctaggagtgagcgggatactcatttgtctgcgaagtca 3378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cctgatgacccagactatgatgctaggagtgagcgggatactcatttgtctgcgaagtca 572
Query: 3379 ggaactaaaggacagaagcggagaaaaacatccgactctggttgggcttacacagggaag 3438
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ggcactaaaggacagaagcggagaaaaacatccgactctggttgggcttacacagggaag 512
Query: 3439 gaatatgctagcaaaaaagcaagcggagatgttaagaggaaggacaagcttgaaccttac 3498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaatatgctagcaaaaaagcaagcggagatgttaagaggaaggacaagcttgaaccttac 452
Query: 3499 gcatattggccacttgatcggaaaatgatgagtcgtcgcccacagcaccggtcgactgca 3558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gcatattggccacttgatcggaaaatgatgagtcgtcgcccacagcaccggtcgactgca 392
Query: 3559 agaaaaggtatggccagtgttgtaaagatgacaaaaaagcttgaaggccagagtg-cctc 3617
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 391 agaaaaggtatggccagtgttgtaaagatgacaaaaaagcttgaaggccagagtgccctc 332
Query: 3618 tggtgtgctgtccctgaaa-ggcttgaaactaaaaaagactcacaagaaaggtggcaagg 3676
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tggtgtgctgtccctgaaagggcttgaaactaaaaaagactcacaagaaaggtggcaagg 272
Query: 3677 gaaag 3681
|||||
Sbjct: 271 gaaag 267
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,643
Number of Sequences: 8469
Number of extensions: 14643
Number of successful extensions: 4268
Number of sequences better than 1.0e-03: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4265
Number of HSP's gapped (non-prelim): 1
length of query: 3693
length of database: 5,164,774
effective HSP length: 17
effective length of query: 3676
effective length of database: 5,020,801
effective search space: 18456464476
effective search space used: 18456464476
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)