Miyakogusa Predicted Gene
- chr3.LjT34E16.40.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr3.LjT34E16.40.nc - phase: 0
(3408 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC006103A_C01 KMC006103A_c01 884 0.0
KMC000195A_C02 KMC000195A_c02 615 e-175
KMC013576A_C01 KMC013576A_c01 90 2e-17
KMC013464A_C01 KMC013464A_c01 60 2e-08
>KMC006103A_C01 KMC006103A_c01
Length = 656
Score = 884 bits (446), Expect = 0.0
Identities = 449/450 (99%)
Strand = Plus / Plus
Query: 1 atgtcttctctcagtagggaactggtgttcttgatcttgcagtttctggatgaggaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 atgtcttctctcagtagggaactggtgttcttgatcttgcagtttctggatgaggaaaag 266
Query: 61 ttcaaagagacagttcacaagcttgagcaagagtctgggtttttcttcaacatgaagtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttcaaagagacagttcacaagcttgagcaagagtctgggtttttcttcaacatgaagtat 326
Query: 121 tttgaggatgaagtgcataatgggaattgggaagaggttgagaaatacctctctggattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tttgaggatgaagtgcataatgggaattgggaagaggttgagaaatacctctctggattc 386
Query: 181 acaaaagtagatgataataggtattccatgaagatatttttcgagataaggaaacagaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 acaaaagtagatgataataggtattccatgaagatatttttcgagataaggaaacagaag 446
Query: 241 tatctggaggcattagacaagcatgaccggtccaaggctgttgaaatattagtgaaggat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tatctggaggcattagacaagcatgaccggtccaaggctgttgaaatattagtgaaggat 506
Query: 301 ttgaaagtgtttgctacattcaatgaagaactgttcaaggaaatcacccagctcttgaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttgaaagtgtttgctacattcaatgaagaactgttcaaggaaatcacccagctcttgaca 566
Query: 361 ttggagaattttagggaaaatgaacaattatcaaagtatggtgatacaaagtctgcacga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttggagaattttagggaaaatgaacaattatcaaagtatggtgatacaaagtctgcacga 626
Query: 421 gcaatcatgttggttgagctcaaaaagctc 450
|||||||| |||||||||||||||||||||
Sbjct: 627 gcaatcattttggttgagctcaaaaagctc 656
>KMC000195A_C02 KMC000195A_c02
Length = 634
Score = 615 bits (310), Expect = e-175
Identities = 310/310 (100%)
Strand = Plus / Minus
Query: 3099 gatatacgccagctttttagacgcaacaatctgtgtatttagtgcttcaaatctcagatt 3158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gatatacgccagctttttagacgcaacaatctgtgtatttagtgcttcaaatctcagatt 575
Query: 3159 acgctgccgtatcaatccttctgcttatctcccatcaagtgtcagttccaacgtgcaacc 3218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 acgctgccgtatcaatccttctgcttatctcccatcaagtgtcagttccaacgtgcaacc 515
Query: 3219 acttgtaatcgccgcacatccgcaagaaccgaatcagtttgctacaggactgtcagatgg 3278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 acttgtaatcgccgcacatccgcaagaaccgaatcagtttgctacaggactgtcagatgg 455
Query: 3279 taccgttcatgtgtttgagcccctcgagtctgacggcaagtggggtgtgcctcctccgat 3338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 taccgttcatgtgtttgagcccctcgagtctgacggcaagtggggtgtgcctcctccgat 395
Query: 3339 tgagaatggttcagcaagcaatgtggcagctgcttcaggtggaccttcttcggaacaagc 3398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tgagaatggttcagcaagcaatgtggcagctgcttcaggtggaccttcttcggaacaagc 335
Query: 3399 tcaaagatga 3408
||||||||||
Sbjct: 334 tcaaagatga 325
>KMC013576A_C01 KMC013576A_c01
Length = 641
Score = 89.7 bits (45), Expect = 2e-17
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 40 cagtttctggatgaggaaaagttcaaagagacagttcacaagcttgagcaagagtctggg 99
||||||||||||||||| |||||||||||| | |||||||| |||||| |||| || |||
Sbjct: 297 cagtttctggatgaggagaagttcaaagagtctgttcacaaacttgagaaagaatcaggg 356
Query: 100 tttttcttcaacatgaagtattttgagga 128
|| || ||||| |||||||| ||||||||
Sbjct: 357 ttctttttcaatatgaagtactttgagga 385
>KMC013464A_C01 KMC013464A_c01
Length = 434
Score = 60.0 bits (30), Expect = 2e-08
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 190 gatgataataggtattccatgaagatatttttcgagataaggaaacagaagtatctggag 249
||||| ||||| || ||||||||||| || || ||||| ||||| ||||||||||| ||
Sbjct: 329 gatgacaatagatactccatgaagatcttctttgagattaggaagcagaagtatctagaa 388
Query: 250 gcattagacaagca 263
|| |||||||||||
Sbjct: 389 gcgttagacaagca 402
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,156
Number of Sequences: 8469
Number of extensions: 12156
Number of successful extensions: 3401
Number of sequences better than 1.0e-03: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3394
Number of HSP's gapped (non-prelim): 7
length of query: 3408
length of database: 5,164,774
effective HSP length: 17
effective length of query: 3391
effective length of database: 5,020,801
effective search space: 17025536191
effective search space used: 17025536191
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)