Miyakogusa Predicted Gene

chr3.LjT23H01.130.nc

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr3.LjT23H01.130.nc + phase: 0 
         (1278 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC002861A_C01 KMC002861A_c01                                         236   4e-62

>KMC002861A_C01 KMC002861A_c01
          Length = 704

 Score =  236 bits (119), Expect = 4e-62
 Identities = 240/281 (85%)
 Strand = Plus / Minus

                                                                        
Query: 898  tatttatacagaggatgcattatgtatttgccatcctgttttgcagaaaagcatttgaat 957
            |||||||| || |||||||| |||||| |||| ||||| |||||||||||| ||||||||
Sbjct: 704  tatttatataggggatgcataatgtatctgccttcctgctttgcagaaaagaatttgaat 645

                                                                        
Query: 958  ggtgtttcgggattcattaaacttcaaacctctgatgggagacagtggccggttcgctgc 1017
            ||  ||||||||||||| ||||||||     | |||||||||||||| || |||||||||
Sbjct: 644  gggntttcgggattcatcaaacttcaggttgccgatgggagacagtgnccagttcgctgc 585

                                                                        
Query: 1018 ctttatagaggaggtagagccaagttaagccagggttggtttgaatttgcattagataac 1077
            || |||||||||||| |||| ||||||||||||||||||||||||||  | ||||| |||
Sbjct: 584  ctatatagaggaggtcgagcaaagttaagccagggttggtttgaattccccttagagaac 525

                                                                        
Query: 1078 aatttaggtgaaggtgatgtctgtgtgtttgagctccttaaagtgaaggatgtggcgctg 1137
             ||||||| ||||| |||||||||||||||||||| || | |  || |||||| | ||||
Sbjct: 524  catttaggggaaggggatgtctgtgtgtttgagctgctcagaacgagggatgtagtgctg 465

                                                     
Query: 1138 caagttactctatttcgtgtcactgaagatgtgggattgtt 1178
            ||||||||| |||||||| | |||||||| ||||| |||||
Sbjct: 464  caagttactttatttcgtttaactgaagaagtggggttgtt 424


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4538
Number of Sequences: 8469
Number of extensions: 4538
Number of successful extensions: 1211
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1208
Number of HSP's gapped (non-prelim): 2
length of query: 1278
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1261
effective length of database: 5,020,801
effective search space: 6331230061
effective search space used: 6331230061
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)