Miyakogusa Predicted Gene
- chr3.LjT02L14.60.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr3.LjT02L14.60.nd - phase: 0
(1356 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC016598A_C01 KMC016598A_c01 422 e-118
>KMC016598A_C01 KMC016598A_c01
Length = 488
Score = 422 bits (213), Expect = e-118
Identities = 229/233 (98%), Gaps = 1/233 (0%)
Strand = Plus / Minus
Query: 1125 tgttttgttgtctagttctaatttcccccggacacttgggtctacaaggcgaggtgctgt 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgttttgttgtctagttctaatttcccccggacacttgggtctacaaggcgaggtgctgt 429
Query: 1185 ttctagcagtcgcgatgcagctgttttcagtgagactatgacctctcatcatcctcttgg 1244
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttctagccgtcgcgatgcagctgttttcagtgagactatgacctctcatcatcctcttgg 369
Query: 1245 tgtggatgctagtccagcagcactccggaaaatctctggtgctcaaaaaggttcagctat 1304
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 368 tgtggatgctagtccagcagcactccggaaaatctctggtgctccaaaaggttcagctat 309
Query: 1305 cacatcatcggagcacaaccgaacatcctctggaag-aacacatcaaacataa 1356
|||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 308 cacatcatcggagcacaaccgaacatcctctggaagaaacacatccaacataa 256
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4757
Number of Sequences: 8469
Number of extensions: 4757
Number of successful extensions: 1328
Number of sequences better than 1.0e-03: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1327
Number of HSP's gapped (non-prelim): 1
length of query: 1356
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1339
effective length of database: 5,020,801
effective search space: 6722852539
effective search space used: 6722852539
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)