Miyakogusa Predicted Gene
- chr3.LjT02L14.10.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr3.LjT02L14.10.nd + phase: 0
(2583 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC000759A_C01 KMC000759A_c01 133 1e-30
KMC019310A_C01 KMC019310A_c01 131 4e-30
KMC001175A_C01 KMC001175A_c01 131 4e-30
KMC012498A_C01 KMC012498A_c01 127 6e-29
KMC002843A_C01 KMC002843A_c01 123 9e-28
KMC000506A_C06 KMC000506A_c06 119 1e-26
KMC005439A_C01 KMC005439A_c01 109 1e-23
KMC002772A_C01 KMC002772A_c01 98 5e-20
KMC014315A_C01 KMC014315A_c01 74 8e-13
KMC005778A_C01 KMC005778A_c01 64 7e-10
KMC000731A_C01 KMC000731A_c01 50 1e-05
>KMC000759A_C01 KMC000759A_c01
Length = 514
Score = 133 bits (67), Expect = 1e-30
Identities = 178/215 (82%)
Strand = Plus / Minus
Query: 2218 aaaggaactcctgagtatgatgagctggtcaagagccctcagaaggcttacttgaagaca 2277
||||||||||| || ||||||||| |||| || | ||||| ||||||||| | | ||
Sbjct: 494 aaaggaactccagaatatgatgagatggttaaaaatcctcaaaaggcttacctcagaacc 435
Query: 2278 atcactccaaagtttcagacccttattgacctttctgttatagaaatcttgtcaagacat 2337
||||| ||||||| ||| | ||| ||||||||||||| ||||| || ||||| || |||
Sbjct: 434 atcacaccaaagtaccaggctcttgttgacctttctgtgatagagatattgtctaggcat 375
Query: 2338 gcttctgatgagttgtaccttggggagagagacaatccaaattggacatctgattcaagt 2397
|||||||||||| | |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 374 gcttctgatgagatctaccttggggagagggagaatccaaattggacatctgattcaaag 315
Query: 2398 gcattagaggcctttaagaagtttgggaacaagct 2432
||| || | ||||| || |||||||| | ||||||
Sbjct: 314 gcactacaagccttcaaaaagtttggaaccaagct 280
Score = 60.0 bits (30), Expect = 1e-08
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 2526 tccttctagtgatgaaggattaaccttcagaggaattcccaacagcatctctat 2579
|||||||||||| | ||| ||||| |||||||||||||| ||||| ||||||||
Sbjct: 186 tccttctagtgaggcagggttaactttcagaggaattccaaacagtatctctat 133
>KMC019310A_C01 KMC019310A_c01
Length = 1280
Score = 131 bits (66), Expect = 4e-30
Identities = 204/250 (81%)
Strand = Plus / Plus
Query: 898 ttcacgccgaatgagtttgatagctttgatgaagttcatggactctatgatggtggaatt 957
|||||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||
Sbjct: 85 ttcacgccgaatgagtttgatagcttcgatgaagtgcgtggactctatgaaggtggaatt 144
Query: 958 aagctgcctacaaatgtacttagtaagattagtccattacctgtgctcaaggaagtcttt 1017
|| || ||||||||| || | || | || || || || ||||| || |||||| |||||
Sbjct: 145 aaacttcctacaaatataatcagccaaatcagccctttgcctgttcttaaggaaatcttt 204
Query: 1018 cgaaccgatggtgaacaagccctcaagtttccaccgcctaaagtagttcaagcaactaag 1077
|| || ||||||||| | | ||| | |||||||| ||| | ||| | | || | |||
Sbjct: 205 cgcactgatggtgaaaatgtccttcaatttccaccacctcatgtaatccgagttagcaag 264
Query: 1078 tctgcatggatgactgatgaagaatttgcaagagaaatgctcgccggtgtaaatccaaat 1137
||||||||||||||||||| ||||||| |||||| ||| | || ||||| ||||| |||
Sbjct: 265 tctgcatggatgactgatgttgaatttggaagagagatgattgctggtgttaatcctaat 324
Query: 1138 gtgattcgtt 1147
||||||||||
Sbjct: 325 gtgattcgtt 334
Score = 85.7 bits (43), Expect = 2e-16
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 1504 tggctactggccaaggcatatgtgatagtgaatgactcatgctaccatcaacttgtcagc 1563
||||||||||||||||| |||| || |||||||||||| |||| |||||||| | | |
Sbjct: 693 tggctactggccaaggctcatgttattgtgaatgactcaggctatcatcaactcattacc 752
Query: 1564 cattggttaaatactcatgcagttattgagccattcgtcattgcaactcacagacatct 1622
|| |||||||||||||||||| |||||||| |||| ||| ||||| ||||||||||
Sbjct: 753 cactggttaaatactcatgcaacgattgagccgttcgccatagcaacaaacagacatct 811
Score = 85.7 bits (43), Expect = 2e-16
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 1876 cttgtgatagaggactacccttatgcagttgatggactggagatatgggatgctatctgg 1935
|||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
Sbjct: 1136 cttgtgttagaggactacccttatgctgttgacggacttgagatatgggatgctattaag 1195
Query: 1936 atatgggtcaaagactacgtctccttgtactaccc 1970
| ||||| |||||||||||||||| || |||||
Sbjct: 1196 aagtgggttcaagactacgtctccttatattaccc 1230
Score = 71.9 bits (36), Expect = 3e-12
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 1346 caaaggcttatgctaccagaaccatccttttcttaaaagatgatggaactttaaagccac 1405
||||||||||||| |||||||| ||||| ||||| ||||||||||| |||||| ||||
Sbjct: 535 caaaggcttatgccaccagaacaatcctgttcttgaaagatgatggggctttaaccccac 594
Query: 1406 tggtcatagagttgagtttgccacatcc 1433
| | ||| ||||||||| | ||||||||
Sbjct: 595 ttgccattgagttgagtctaccacatcc 622
Score = 50.1 bits (25), Expect = 1e-05
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 1752 gtactctatggaaatgtcctctgtactttacaagaattgggtttt 1796
||||||| |||| || || |||||| |||||||||||||||||||
Sbjct: 941 gtactctttggagatttcttctgtagtttacaagaattgggtttt 985
>KMC001175A_C01 KMC001175A_c01
Length = 569
Score = 131 bits (66), Expect = 4e-30
Identities = 147/174 (84%)
Strand = Plus / Minus
Query: 2198 gccggcggttcatgccgaagaaaggaactcctgagtatgatgagctggtcaagagccctc 2257
||||||| ||||||||| ||||||| ||| | ||||||||||||||||| | || |||
Sbjct: 569 gccggcgattcatgccggagaaaggtactgccgagtatgatgagctggtaacgaatactc 510
Query: 2258 agaaggcttacttgaagacaatcactccaaagtttcagacccttattgacctttctgtta 2317
||||||||||||||| |||||| || |||||| |||| || || ||||| ||||| || |
Sbjct: 509 agaaggcttacttgaggacaattacaccaaagcttcaaactctcattgatctttcagtca 450
Query: 2318 tagaaatcttgtcaagacatgcttctgatgagttgtaccttggggagagagaca 2371
| ||||| |||||||| |||||||||||||||| ||||||||| | |||||||
Sbjct: 449 ttgaaatattgtcaaggcatgcttctgatgagtactaccttgggcaaagagaca 396
>KMC012498A_C01 KMC012498A_c01
Length = 646
Score = 127 bits (64), Expect = 6e-29
Identities = 148/176 (84%)
Strand = Plus / Plus
Query: 1504 tggctactggccaaggcatatgtgatagtgaatgactcatgctaccatcaacttgtcagc 1563
|||||||| || ||||| || || || ||||| ||||| ||||| |||||||||||||||
Sbjct: 190 tggctacttgcaaaggcttacgttatcgtgaacgactcttgctatcatcaacttgtcagc 249
Query: 1564 cattggttaaatactcatgcagttattgagccattcgtcattgcaactcacagacatctt 1623
||||||||||| |||||||| ||| | ||||||||| |||| ||||| |||| ||||||
Sbjct: 250 cattggttaaacactcatgctgttgtcgagccattcatcatagcaacaaacaggcatctt 309
Query: 1624 agctttgttcaccctatatataagcttctgtatcctcactatcgtgacaccatgaa 1679
|| | ||||||||||| || |||||| ||| ||| ||||| |||||||| |||||
Sbjct: 310 agtgtggttcaccctatctacaagcttttgtttccccactaccgtgacacaatgaa 365
Score = 54.0 bits (27), Expect = 7e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1894 ccttatgcagttgatggactggagatatgggatgctatc 1932
|||||||| | ||||||||| ||||||||||||||||||
Sbjct: 580 ccttatgctgctgatggactagagatatgggatgctatc 618
>KMC002843A_C01 KMC002843A_c01
Length = 741
Score = 123 bits (62), Expect = 9e-28
Identities = 155/186 (83%)
Strand = Plus / Minus
Query: 2398 gcattagaggcctttaagaagtttgggaacaagcttgctgaaattgagaaaaaactctct 2457
|||||| ||||||| ||||||||||| | ||||| ||||||||||||||||| ||| |
Sbjct: 357 gcattacaggccttcaagaagtttggaacaaagctggctgaaattgagaaaaagctcatt 298
Query: 2458 cagagaaacaatgatgagaagctgagaaaccgtcgtggaccggttcagatgccttatacc 2517
||||| |||| |||||||| ||||| ||||| ||| ||||| ||||||| || ||
Sbjct: 297 cagaggaacagtgatgagagcctgaggaaccggtatgggccggtgaagatgccctacact 238
Query: 2518 ctgctttatccttctagtgatgaaggattaaccttcagaggaattcccaacagcatctct 2577
||||| |||||||||||||| |||||||| || |||||||| ||||| ||||| |||||
Sbjct: 237 ctgctctatccttctagtgaggaaggattgactttcagaggcattcctaacagtatctcc 178
Query: 2578 atctga 2583
||||||
Sbjct: 177 atctga 172
Score = 101 bits (51), Expect = 3e-21
Identities = 105/123 (85%)
Strand = Plus / Minus
Query: 2248 aagagccctcagaaggcttacttgaagacaatcactccaaagtttcagacccttattgac 2307
|||| |||||||||||| || |||| ||| ||||| ||||| | ||||||| | ||||
Sbjct: 510 aagaaccctcagaaggcctatttgaggaccatcacagcaaagagtgagaccctgactgac 451
Query: 2308 ctttctgttatagaaatcttgtcaagacatgcttctgatgagttgtaccttggggagaga 2367
||| || ||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 450 cttactattatagaggtgttgtcaaggcatgcttctgatgagttgtaccttggggagaga 391
Query: 2368 gac 2370
|||
Sbjct: 390 gac 388
>KMC000506A_C06 KMC000506A_c06
Length = 2176
Score = 119 bits (60), Expect = 1e-26
Identities = 144/172 (83%)
Strand = Plus / Minus
Query: 2220 aggaactcctgagtatgatgagctggtcaagagccctcagaaggcttacttgaagacaat 2279
||||||||| |||||||||||| |||| || || ||||| ||||||||||| | || ||
Sbjct: 551 aggaactccagagtatgatgagatggtgaaaagtcctcaaaaggcttacttaagaaccat 492
Query: 2280 cactccaaagtttcagacccttattgacctttctgttatagaaatcttgtcaagacatgc 2339
|| ||||||| | |||| |||||||| ||| |||| ||||| || ||||| || |||||
Sbjct: 491 tacgccaaagtatgagactcttattgatcttactgtgatagagatattgtctaggcatgc 432
Query: 2340 ttctgatgagttgtaccttggggagagagacaatccaaattggacatctgat 2391
|||||||||| | |||||||||||||| || |||||| | ||||||||||||
Sbjct: 431 ttctgatgagatctaccttggggagagggagaatccagaatggacatctgat 380
Score = 119 bits (60), Expect = 1e-26
Identities = 186/228 (81%)
Strand = Plus / Minus
Query: 1472 tgcctgcaaaagaaggtgttgaaagttctcagtggctactggccaaggcatatgtgatag 1531
|||||||||| ||||| ||||| ||| || |||||| |||| ||||| ||||| || |
Sbjct: 1303 tgcctgcaaatgaaggggttgagagtactatttggctattggctaaggcttatgtaattg 1244
Query: 1532 tgaatgactcatgctaccatcaacttgtcagccattggttaaatactcatgcagttattg 1591
| |||||||| ||||| ||||| || | |||||||||||||||||||||||||| || |
Sbjct: 1243 taaatgactcttgctatcatcagctcatgagccattggttaaatactcatgcagtgatgg 1184
Query: 1592 agccattcgtcattgcaactcacagacatcttagctttgttcaccctatatataagcttc 1651
||||||| ||||| ||||| | |||||||| || | |||||||||| |||||||||
Sbjct: 1183 agccatttgtcatagcaacaaatagacatctcagtgtccttcaccctatttataagcttt 1124
Query: 1652 tgtatcctcactatcgtgacaccatgaatataaattcccttgctcgag 1699
| ||||||| || |||||||| || ||||||||| ||||||||||
Sbjct: 1123 tacatcctcattaccgtgacacaataaatataaatggacttgctcgag 1076
Score = 81.8 bits (41), Expect = 3e-15
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 1075 aagtctgcatggatgactgatgaagaatttgcaagagaaatgctcgccggtgtaaatcca 1134
||||||||||||||||||||||||||||||| |||||| ||| | || || ||||||||
Sbjct: 1676 aagtctgcatggatgactgatgaagaatttggaagagagatgattgctggagtaaatcct 1617
Query: 1135 aatgtgatt 1143
|||||||||
Sbjct: 1616 aatgtgatt 1608
Score = 73.8 bits (37), Expect = 8e-13
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 1883 tagaggactacccttatgcagttgatggactggagatatgggatgctat 1931
||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 891 tagaggactacccttatgctgttgatggactagagatttgggatgctat 843
Score = 65.9 bits (33), Expect = 2e-10
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 2539 gaaggattaaccttcagaggaattcccaacagcatctctat 2579
||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 232 gaagggttaactttcagaggaattcccaacagcatctctat 192
Score = 56.0 bits (28), Expect = 2e-07
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 1347 aaaggcttatgctaccagaaccatccttttcttaaaagatgatggaactttaaagccact 1406
|||||||||||| ||||| || ||||| ||||| ||||||||||| |||||| |||||
Sbjct: 1407 aaaggcttatgccaccaggacaatcctattcttgaaagatgatggggctttaacaccact 1348
Query: 1407 ggtcatagagttgagt 1422
| ||| |||||||||
Sbjct: 1347 tgccatcgagttgagt 1332
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 784 ccaagagatgaagcttttggtcacttgaagtcatc 818
|||||||||||| |||||||||||||||||||||
Sbjct: 1967 ccaagagatgaaaattttggtcacttgaagtcatc 1933
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 608 ggatctatgattatgatgtctacaatg 634
||||||||||||||||||| |||||||
Sbjct: 2145 ggatctatgattatgatgtttacaatg 2119
>KMC005439A_C01 KMC005439A_c01
Length = 842
Score = 109 bits (55), Expect = 1e-23
Identities = 193/239 (80%)
Strand = Plus / Plus
Query: 409 gacattccaaaccatggaaccatctactttgtttgcaactcctggatttacaatgctaaa 468
|||||||||||| | |||| |||| |||| | |||||||| ||| |||||||| |||
Sbjct: 488 gacattccaaacaaaggaaacatcgacttcctctgcaactcatgggtttacaataacaaa 547
Query: 469 cacttcaaaaatgaccgaattttctttgccaacacgccatatcttccaagtgaaacacca 528
||| ||||| ||| || ||||||||| ||||| | |||| ||||| |||||||||||
Sbjct: 548 aactacaaaactgagcgcattttcttttccaaccagacataccttccgggtgaaacacca 607
Query: 529 gctccattggctcagtacagagaagaagagttgaagaatttgagaggagatggaactggt 588
|||||| | | | ||||||||| ||||| |||||| | | |||||||||||||| ||
Sbjct: 608 gctccactagtgtactacagagaacaagagctgaagactgtaagaggagatggaacagga 667
Query: 589 gaacgtaaagaatgggaaaggatctatgattatgatgtctacaatgatttgggggatcc 647
|| || || |||||||| ||| ||||||| || ||||| |||||||||||||| |||||
Sbjct: 668 gagcgcaaggaatgggacagggtctatgactacgatgtttacaatgatttgggcgatcc 726
>KMC002772A_C01 KMC002772A_c01
Length = 482
Score = 97.6 bits (49), Expect = 5e-20
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 2308 ctttctgttatagaaatcttgtcaagacatgcttctgatgagttgtaccttggggagaga 2367
||||| || ||||| || ||||| || ||||||||||||||| | |||||||| ||||
Sbjct: 454 ctttcggtgatagagatattgtctaggcatgcttctgatgaggtctaccttggacagagg 395
Query: 2368 gacaatccaaattggacatctgattcaagtgcattagaggcctttaagaagtttgggaac 2427
|||||||||||||||||||||||| |||| |||||| | ||||| |||||||||| | |
Sbjct: 394 gacaatccaaattggacatctgatacaagggcattacaagccttccagaagtttggaagc 335
Query: 2428 aagct 2432
|||||
Sbjct: 334 aagct 330
Score = 75.8 bits (38), Expect = 2e-13
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 2526 tccttctagtgatgaaggattaaccttcagaggaattcccaacagcatctctat 2579
|||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 236 tccttctagtgaggaaggattaactttcagaggaattccaaacagtatctctat 183
>KMC014315A_C01 KMC014315A_c01
Length = 618
Score = 73.8 bits (37), Expect = 8e-13
Identities = 103/125 (82%)
Strand = Plus / Plus
Query: 337 ggaattcctggagcattttacatcaagaatttcatgcaaactgagtttttccttgtgagt 396
|||||||||||||||||||||||||| || | |||||| ||||| |||||||| ||
Sbjct: 399 ggaattcctggagcattttacatcaaaaactatatgcaatgcgagttcttccttgtcagc 458
Query: 397 ttgattcttgaagacattccaaaccatggaaccatctactttgtttgcaactcctggatt 456
|||| || ||||||||||| || || |||||||| ||||| ||||||||| ||| ||
Sbjct: 459 ttgaccctcgaagacattcccaatcacggaaccattcgctttgattgcaactcatgggtt 518
Query: 457 tacaa 461
|||||
Sbjct: 519 tacaa 523
>KMC005778A_C01 KMC005778A_c01
Length = 1005
Score = 63.9 bits (32), Expect = 7e-10
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 2090 tgattgaagcttgcactatcatcatatggattgcttcagctcttcatgcagc 2141
|||||||| |||||||||| || |||||| ||||||||||||| ||||||||
Sbjct: 922 tgattgaatcttgcactattattatatgggttgcttcagctctgcatgcagc 973
Score = 46.1 bits (23), Expect = 2e-04
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 1885 gaggactacccttatgcagttgatggactggagatatgggatgctatctggatatgggt 1943
||||| |||||||||||||||||||| | ||||| ||| ||||||| ||| ||||||
Sbjct: 714 gaggattacccttatgcagttgatgggttagagatctggtttgctatcaggacatgggt 772
>KMC000731A_C01 KMC000731A_c01
Length = 572
Score = 50.1 bits (25), Expect = 1e-05
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 406 gaagacattccaaaccatggaaccatctactttgtttgcaactcctggatttacaatgct 465
||||||||||| || || |||||||| |||| || |||||||||||| ||||||| ||
Sbjct: 463 gaagacattcccaatcacggaaccattcacttcgtctgcaactcctgggtttacaacgcc 522
Query: 466 aaacacttcaaaaatgaccgaattttctt 494
||| ||| ||| || || || ||||||||
Sbjct: 523 aaaaactacaagaaggatcgcattttctt 551
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9667
Number of Sequences: 8469
Number of extensions: 9667
Number of successful extensions: 2718
Number of sequences better than 1.0e-03: 11
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2667
Number of HSP's gapped (non-prelim): 47
length of query: 2583
length of database: 5,164,774
effective HSP length: 17
effective length of query: 2566
effective length of database: 5,020,801
effective search space: 12883375366
effective search space used: 12883375366
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)