Miyakogusa Predicted Gene
- chr3.CM0634.670.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr3.CM0634.670.nc - phase: 0
(2775 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC000290A_C02 KMC000290A_c02 438 e-122
KMC000982A_C01 KMC000982A_c01 60 1e-08
>KMC000290A_C02 KMC000290A_c02
Length = 774
Score = 438 bits (221), Expect = e-122
Identities = 221/221 (100%)
Strand = Plus / Minus
Query: 2555 gaagcagcagtggaccaagtgatgactggagatctgcctttgatgcagctgccaatggcc 2614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gaagcagcagtggaccaagtgatgactggagatctgcctttgatgcagctgccaatggcc 715
Query: 2615 ctgttagccgcagtggctcatcgagatctggatccaacggtcatactcgacataatagtg 2674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ctgttagccgcagtggctcatcgagatctggatccaacggtcatactcgacataatagtg 655
Query: 2675 atcctgcacaaaatggtgactctggttcaaactcgggaagccgtcgaacacccaatcgac 2734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 atcctgcacaaaatggtgactctggttcaaactcgggaagccgtcgaacacccaatcgac 595
Query: 2735 tacctcctgctccaccaggttcctcgggttacagatattaa 2775
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tacctcctgctccaccaggttcctcgggttacagatattaa 554
>KMC000982A_C01 KMC000982A_c01
Length = 543
Score = 60.0 bits (30), Expect = 1e-08
Identities = 108/134 (80%)
Strand = Plus / Plus
Query: 109 ccttccactttcctcaacgtcgtcgctctcggcggtgtcggagctggtaaatccgctgtt 168
||||||||||||||| | ||||| || |||||| ||| || ||||| ||||| ||||
Sbjct: 202 ccttccactttcctccatgtcgttgccctcggcaatgttggtgctggaaaatctgctgcc 261
Query: 169 ctcaacagtttgattggacatcccgttttgcctactggcgaaaacggagctactcgggct 228
| || || |||||||||||||| ||| |||| ||||| ||||| || ||||| |||||
Sbjct: 262 ttgaatagcttgattggacatcctgttctgccaactggtgaaaatggtgctaccagggct 321
Query: 229 cctatatgcattga 242
||||| |||||||
Sbjct: 322 cctattagcattga 335
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8682
Number of Sequences: 8469
Number of extensions: 8682
Number of successful extensions: 2363
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2358
Number of HSP's gapped (non-prelim): 4
length of query: 2775
length of database: 5,164,774
effective HSP length: 17
effective length of query: 2758
effective length of database: 5,020,801
effective search space: 13847369158
effective search space used: 13847369158
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)