Miyakogusa Predicted Gene
- chr3.CM0634.370.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr3.CM0634.370.nd + phase: 0
(1671 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC010545A_C01 KMC010545A_c01 924 0.0
KMC003453A_C01 KMC003453A_c01 652 0.0
KMC015883A_C01 KMC015883A_c01 369 e-102
>KMC010545A_C01 KMC010545A_c01
Length = 530
Score = 924 bits (466), Expect = 0.0
Identities = 466/466 (100%)
Strand = Plus / Plus
Query: 1 atgggaagccagtggaagttgaatgatcaccctaagcttccaaaggggaagcagattgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 atgggaagccagtggaagttgaatgatcaccctaagcttccaaaggggaagcagattgcc 124
Query: 61 atggtggttttggatggttggggtgaggccaaacctaatgagtacaactgcatccacact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 atggtggttttggatggttggggtgaggccaaacctaatgagtacaactgcatccacact 184
Query: 121 gccgagacacctactatggattctctaaaaaacggtgcacctgagaggtggagattggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gccgagacacctactatggattctctaaaaaacggtgcacctgagaggtggagattggtt 244
Query: 181 aaggctcatgggaaagctgtggggcttcctactgatgatgatatgggcaacagtgaagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aaggctcatgggaaagctgtggggcttcctactgatgatgatatgggcaacagtgaagtt 304
Query: 241 ggtcacaatgctcttggtgctggccgtatatatgctcagggtgctaagcttgttgacatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ggtcacaatgctcttggtgctggccgtatatatgctcagggtgctaagcttgttgacatt 364
Query: 301 gctcttgaatctgggagcatttatgaaggagaaggtttcaagtacataaaggaatgtttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gctcttgaatctgggagcatttatgaaggagaaggtttcaagtacataaaggaatgtttt 424
Query: 361 gaaactggcacattgcatctccttgggttactaagtgacggtggagtccactccagactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gaaactggcacattgcatctccttgggttactaagtgacggtggagtccactccagactt 484
Query: 421 gaccagttgcagttgctccttaaaggtgttagtgagcgaggtgtta 466
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gaccagttgcagttgctccttaaaggtgttagtgagcgaggtgtta 530
>KMC003453A_C01 KMC003453A_c01
Length = 545
Score = 652 bits (329), Expect = 0.0
Identities = 329/329 (100%)
Strand = Plus / Minus
Query: 1343 ctgtaaagatgatccttgatgcaattgagcaagtgggtggaatttatgttgtaactgctg 1402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ctgtaaagatgatccttgatgcaattgagcaagtgggtggaatttatgttgtaactgctg 486
Query: 1403 accacggaaatgcagaggacatggtgaagagggacaaatctggaaatcctcaacttgaca 1462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 accacggaaatgcagaggacatggtgaagagggacaaatctggaaatcctcaacttgaca 426
Query: 1463 agaatggaaaaatccagattctcacttctcacactcttgagccagtgccacttgcgattg 1522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agaatggaaaaatccagattctcacttctcacactcttgagccagtgccacttgcgattg 366
Query: 1523 gaggccctggactgtcagctggtgtcaggttccgcagtgatgttcccaccggaggcctgg 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gaggccctggactgtcagctggtgtcaggttccgcagtgatgttcccaccggaggcctgg 306
Query: 1583 ccaatgtcgcagctactgtgataaatctccatggatttgaggctcccagcgactacgaga 1642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccaatgtcgcagctactgtgataaatctccatggatttgaggctcccagcgactacgaga 246
Query: 1643 caactctgatagaagtagttgataaatag 1671
|||||||||||||||||||||||||||||
Sbjct: 245 caactctgatagaagtagttgataaatag 217
>KMC015883A_C01 KMC015883A_c01
Length = 536
Score = 369 bits (186), Expect = e-102
Identities = 375/438 (85%)
Strand = Plus / Minus
Query: 1227 tgcaattcttagcaagaaatttgatcaggtacgtgttaacctcccaaatagtgatatggt 1286
||||||||||||| ||||||||||||||||||||| || || || ||||| || |||||
Sbjct: 536 tgcaattcttagccggaaatttgatcaggtacgtgtcaatctaccgaatagcgacatggt 477
Query: 1287 ggggcatacaggtgacattgaagcaacagttgtggcttgcaaggctgctgatgaggctgt 1346
|||||| |||||||| |||||||||||| |||||| |||||||| |||||||| || ||
Sbjct: 476 ggggcacacaggtgatattgaagcaacaattgtgggatgcaaggcagctgatgatgcagt 417
Query: 1347 aaagatgatccttgatgcaattgagcaagtgggtggaatttatgttgtaactgctgacca 1406
|||||||| ||||| ||||| |||||||| | |||||| |||||||| |||||||||||
Sbjct: 416 gaagatgattcttgacgcaatagagcaagtagatggaatctatgttgtcactgctgacca 357
Query: 1407 cggaaatgcagaggacatggtgaagagggacaaatctggaaatcctcaacttgacaagaa 1466
|||||||||||||| ||||| ||||| || ||||||||||| |||| || |||||| |
Sbjct: 356 tggaaatgcagaggatatggtcaagagagataaatctggaaaacctcttctagacaagga 297
Query: 1467 tggaaaaatccagattctcacttctcacactcttgagccagtgccacttgcgattggagg 1526
||| |||||||||||||||| ||||||||||||| ||||||||||| |||| ||||||||
Sbjct: 296 tgggaaaatccagattctcagttctcacactcttcagccagtgccaattgctattggagg 237
Query: 1527 ccctggactgtcagctggtgtcaggttccgcagtgatgttcccaccggaggcctggccaa 1586
|||||| | ||| ||||||||||||| | ||| |||||| |||||| || |||||
Sbjct: 236 tcctggattatcacctggtgtcaggtttagagacgatcttcccaacggaggtctagccaa 177
Query: 1587 tgtcgcagctactgtgataaatctccatggatttgaggctcccagcgactacgagacaac 1646
||| || || |||||||| ||||| |||||||||||||||||||| ||||| ||| ||||
Sbjct: 176 tgttgctgcaactgtgatgaatcttcatggatttgaggctcccagtgactatgagccaac 117
Query: 1647 tctgatagaagtagttga 1664
||| |||||||||||||
Sbjct: 116 tcttgtagaagtagttga 99
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6053
Number of Sequences: 8469
Number of extensions: 6053
Number of successful extensions: 1668
Number of sequences better than 1.0e-03: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1664
Number of HSP's gapped (non-prelim): 4
length of query: 1671
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1654
effective length of database: 5,020,801
effective search space: 8304404854
effective search space used: 8304404854
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)