Miyakogusa Predicted Gene

chr3.CM0634.20.nc

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr3.CM0634.20.nc + phase: 0 
         (7137 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC006286A_C01 KMC006286A_c01                                         718   0.0  

>KMC006286A_C01 KMC006286A_c01
          Length = 567

 Score =  718 bits (362), Expect = 0.0
 Identities = 367/369 (99%)
 Strand = Plus / Minus

                                                                        
Query: 6769 attgtggacttggacacggaagggcgttaccttttcctaaatgctattgctaaccaactg 6828
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 567  attgtggacttggacacggaagggcgttaccttttcctaaatgctattgctaaccnactg 508

                                                                        
Query: 6829 cgttatcccaatactcacacacactacttttccttcatcctgctccatttgtttgcagag 6888
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507  cgttatcccgatactcacacacactacttttccttcatcctgctccatttgtttgcagag 448

                                                                        
Query: 6889 tctaaccaggaaattatccaagaacaaattacaagagtcgtgttagaacgcttaattgtt 6948
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447  tctaaccaggaaattatccaagaacaaattacaagagtcgtgttagaacgcttaattgtt 388

                                                                        
Query: 6949 aatcgacctcatccttggggtctcctggttacttttattgagctggtcaagaatcgcatg 7008
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387  aatcgacctcatccttggggtctcctggttacttttattgagctggtcaagaatcgcatg 328

                                                                        
Query: 7009 tatagcttctggaacagatctttcataagatgcgcgccagagatcgaaaaactatttgaa 7068
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327  tatagcttctggaacagatctttcataagatgcgcgccagagatcgaaaaactatttgaa 268

                                                                        
Query: 7069 tcactatttgaatcagtctcaagatcttgtggaggtccaaaaccagtggatgagtctgga 7128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267  tcactatttgaatcagtctcaagatcttgtggaggtccaaaaccagtggatgagtctgga 208

                     
Query: 7129 tgggtctga 7137
            |||||||||
Sbjct: 207  tgggtctga 199


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,592
Number of Sequences: 8469
Number of extensions: 25592
Number of successful extensions: 7067
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7063
Number of HSP's gapped (non-prelim): 2
length of query: 7137
length of database: 5,164,774
effective HSP length: 18
effective length of query: 7119
effective length of database: 5,012,332
effective search space: 35682791508
effective search space used: 35682791508
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 23 (46.1 bits)