Miyakogusa Predicted Gene
- chr3.CM0590.560.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr3.CM0590.560.nd + phase: 0
(768 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC007578A_C01 KMC007578A_c01 557 e-159
KMC007608A_C01 KMC007608A_c01 446 e-125
KMC002288A_C02 KMC002288A_c02 58 1e-08
>KMC007578A_C01 KMC007578A_c01
Length = 557
Score = 557 bits (281), Expect = e-159
Identities = 295/297 (99%), Gaps = 2/297 (0%)
Strand = Plus / Minus
Query: 474 gaaattgtattggggaattgcagctgatggatctgtggtgatctctgatgatctaaaagt 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gaaattgtattggggaattgcagctgatggatctgtggtgatctctgatgatctaaaagt 498
Query: 534 cataaaagagggatgtgccaaatcctttgctccctttccaacagggtgtatttttcacag 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cataaaagagggatgtgccaaatcctttgctccctttccaacagggtgtatttttcacag 438
Query: 594 tgaaggaggtctggtgagctttgagc-at-ccaatgcacaagttgaaggcaatgccaagg 651
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 437 tgaaggaggtctggtgagctttgagccatgccaatgcacaagttgaaggcaatgccaagg 378
Query: 652 atagacagtgaaggggccatgtgtggggccaacttcaaagttgataagtatgcaagagtt 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atagacagtgaaggggccatgtgtggggccaacttcaaagttgataagtatgcaagagtt 318
Query: 712 aacagcattcctcgagtgggaagtcaatccaattggatggagtgggaccagcattag 768
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aacagcattcctcgagtgggaagtcaatccaattggatggagtgggaccagcattag 261
>KMC007608A_C01 KMC007608A_c01
Length = 524
Score = 446 bits (225), Expect = e-125
Identities = 336/373 (90%)
Strand = Plus / Minus
Query: 396 tgatggaagctttgcctttgttgtctatgacagcaaagttggcactgtctttgcagcact 455
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 524 tgatggaagctttgcctttgttgtctatgacagcaaggttggcactgtctttgcagctct 465
Query: 456 gggttctgatggtggagtgaaattgtattggggaattgcagctgatggatctgtggtgat 515
|||||||||||||||| |||| | || ||||| ||||||||||||||||||||||| ||
Sbjct: 464 gggttctgatggtggactgaagctatactggggtattgcagctgatggatctgtggtaat 405
Query: 516 ctctgatgatctaaaagtcataaaagagggatgtgccaaatcctttgctccctttccaac 575
|||||||||| || | || ||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 404 ctctgatgatttagatgttataaaagagggttgtgccaaatcctttgctccctttccgac 345
Query: 576 agggtgtatttttcacagtgaaggaggtctggtgagctttgagcatccaatgcacaagtt 635
||||||||| |||||||||||||||||| || |||||||||||||||| ||| |||||||
Sbjct: 344 agggtgtatgtttcacagtgaaggaggtttgatgagctttgagcatcccatgaacaagtt 285
Query: 636 gaaggcaatgccaaggatagacagtgaaggggccatgtgtggggccaacttcaaagttga 695
|||||| ||||||||| |||| |||||||||| ||||||||| || |||||||| |||||
Sbjct: 284 gaaggccatgccaagggtagatagtgaaggggtcatgtgtggagctaacttcaaggttga 225
Query: 696 taagtatgcaagagttaacagcattcctcgagtgggaagtcaatccaattggatggagtg 755
||||||| |||| || | ||||| |||||||||||||||||| || |||||||||| ||
Sbjct: 224 taagtatacaagggtccatagcatacctcgagtgggaagtcaagcccattggatggaatg 165
Query: 756 ggaccagcattag 768
||| |||||||||
Sbjct: 164 ggaacagcattag 152
>KMC002288A_C02 KMC002288A_c02
Length = 652
Score = 58.0 bits (29), Expect = 1e-08
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 608 tgagctttgagcatccaatgcacaagttgaaggcaatgccaaggatagacagtgaagggg 667
|||||||| ||||||||| | ||| |||| |||||||| ||||| |||||||| |||
Sbjct: 441 tgagctttcagcatccaactaagaagatgaaagcaatgcctaggattgacagtgagggga 382
Query: 668 ccatgtgtggggccaacttcaaagttgat 696
|||||||| ||||||||||| ||||||
Sbjct: 381 ttatgtgtggagccaacttcaatgttgat 353
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2892
Number of Sequences: 8469
Number of extensions: 2892
Number of successful extensions: 832
Number of sequences better than 1.0e-03: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 827
Number of HSP's gapped (non-prelim): 4
length of query: 768
length of database: 5,164,774
effective HSP length: 16
effective length of query: 752
effective length of database: 5,029,270
effective search space: 3782011040
effective search space used: 3782011040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)