Miyakogusa Predicted Gene
- chr3.CM0396.560.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr3.CM0396.560.nc + phase: 0
(1620 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC009982A_C01 KMC009982A_c01 182 7e-46
KMC013324A_C01 KMC013324A_c01 123 6e-28
KMC002800A_C01 KMC002800A_c01 115 1e-25
KMC004283A_C01 KMC004283A_c01 44 4e-04
>KMC009982A_C01 KMC009982A_c01
Length = 401
Score = 182 bits (92), Expect = 7e-46
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 1529 tgatcaaaatagaagaaaggcttgcttcaggagctcgggttataatccaatcatccaaac 1588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgatcaaaatagaagaaaggcttgcttcaggagctcgggttataatccaatcatccaaac 342
Query: 1589 cattttgtgacacagcatctagcagcccttga 1620
||||||||||||||||||||||||||||||||
Sbjct: 341 cattttgtgacacagcatctagcagcccttga 310
>KMC013324A_C01 KMC013324A_c01
Length = 567
Score = 123 bits (62), Expect = 6e-28
Identities = 104/118 (88%)
Strand = Plus / Minus
Query: 262 agaagctacaagagtggatttgtgtggcatgatctttctgaagatgatttaattttacca 321
||||||||||||| ||||||||||||||||||||| | ||||||||| | |||||||
Sbjct: 517 agaagctacaagaatggatttgtgtggcatgatctctgcgaagatgataaatctttacca 458
Query: 322 gcacatggaaatgagtatgtcctcaaaggctctgagctctttgatgaatccaattcag 379
|| ||||||||| || |||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 457 gcccatggaaataagaatgtcctcaaaggctctgagctctttgacaaatccaactcag 400
>KMC002800A_C01 KMC002800A_c01
Length = 592
Score = 115 bits (58), Expect = 1e-25
Identities = 103/118 (87%)
Strand = Plus / Minus
Query: 262 agaagctacaagagtggatttgtgtggcatgatctttctgaagatgatttaattttacca 321
||||||||||||| ||||||||||||||||||||| | ||||||||| | |||||||
Sbjct: 583 agaagctacaagaatggatttgtgtggcatgatctctgcgaagatgataaatctttacca 524
Query: 322 gcacatggaaatgagtatgtcctcaaaggctctgagctctttgatgaatccaattcag 379
| ||||||||| || |||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 523 tcccatggaaataagaatgtcctcaaaggctctgagctctttgacaaatccaactcag 466
>KMC004283A_C01 KMC004283A_c01
Length = 733
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1150 ttggaagacaaagaatactttagtgggagcttaattga 1187
|||||||||||||| || |||||||| ||||| |||||
Sbjct: 576 ttggaagacaaagagtattttagtggtagcttgattga 539
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6285
Number of Sequences: 8469
Number of extensions: 6285
Number of successful extensions: 1748
Number of sequences better than 1.0e-03: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1741
Number of HSP's gapped (non-prelim): 7
length of query: 1620
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1603
effective length of database: 5,020,801
effective search space: 8048344003
effective search space used: 8048344003
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)