Miyakogusa Predicted Gene
- chr3.CM0396.280.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr3.CM0396.280.nd - phase: 0
(2913 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC005469A_C01 KMC005469A_c01 1330 0.0
KMC000486A_C04 KMC000486A_c04 632 0.0
KMC006488A_C01 KMC006488A_c01 58 5e-08
KMC013121A_C01 KMC013121A_c01 56 2e-07
>KMC005469A_C01 KMC005469A_c01
Length = 717
Score = 1330 bits (671), Expect = 0.0
Identities = 671/671 (100%)
Strand = Plus / Plus
Query: 1 atgtcacgccgtggaggaagacaacaacccgatccccgccgtgatcaaccgtttccgacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 atgtcacgccgtggaggaagacaacaacccgatccccgccgtgatcaaccgtttccgacg 106
Query: 61 ccgtcccctcatccagatgcaggcacaggccgcggccgtggccgtgcacgggcgccacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ccgtcccctcatccagatgcaggcacaggccgcggccgtggccgtgcacgggcgccacct 166
Query: 121 tctcaacaaccgccatcatcgtcctctcattctcccgctcctgtcatcggcgctccgatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tctcaacaaccgccatcatcgtcctctcattctcccgctcctgtcatcggcgctccgatt 226
Query: 181 tctccagcgcctgttgtttccgcgccgatttccgcgccatcgcccccgccgccttctccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tctccagcgcctgttgtttccgcgccgatttccgcgccatcgcccccgccgccttctccg 286
Query: 241 gttccggtcgacgctctgagttccgaggtcgagcagaaactcgcattgcgaccggcagcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gttccggtcgacgctctgagttccgaggtcgagcagaaactcgcattgcgaccggcagcg 346
Query: 301 ccgtcgtcgacgaaggctattaggttcccggaccggccagggttcggtcgattagggaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ccgtcgtcgacgaaggctattaggttcccggaccggccagggttcggtcgattagggaag 406
Query: 361 aagatacaagtccgagcgaatcactttcagttgcaagtcgctgaacgcgatcttcaccat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aagatacaagtccgagcgaatcactttcagttgcaagtcgctgaacgcgatcttcaccat 466
Query: 421 tacgatgttgctatcactcctgagattacttcgaagaaggtgaccagagaggtggtgagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tacgatgttgctatcactcctgagattacttcgaagaaggtgaccagagaggtggtgagt 526
Query: 481 cagttgataaagatgtacaaggagtcggtgttggggaatcgcttaccggtttttgatgga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cagttgataaagatgtacaaggagtcggtgttggggaatcgcttaccggtttttgatgga 586
Query: 541 cggaagaatctcttcacggcgggtccgttgccgttttcatcgaaggaatttgtggtgaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 cggaagaatctcttcacggcgggtccgttgccgttttcatcgaaggaatttgtggtgaag 646
Query: 601 ttggaagatgataggccgaaagcctcgtcctcttctggttctaaaaaagagaaacgggag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ttggaagatgataggccgaaagcctcgtcctcttctggttctaaaaaagagaaacgggag 706
Query: 661 cggcaatttaa 671
|||||||||||
Sbjct: 707 cggcaatttaa 717
>KMC000486A_C04 KMC000486A_c04
Length = 641
Score = 632 bits (319), Expect = 0.0
Identities = 342/347 (98%), Gaps = 2/347 (0%)
Strand = Plus / Minus
Query: 2569 ccaagggagtttgatttttatctcaacagtcatgctggaattcaaggaactagcagacct 2628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ccaagggagtttgatttttatctcaacagtcatgctggaattcaaggaactagcagacct 582
Query: 2629 acccattatcatgttctgtatgatgagaataactttacagctgatgagctacaggggctg 2688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 acccattatcatgttctgtatgatgagaataactttacagctgatgagctacaggggctg 522
Query: 2689 acaaataatttatgctacacgtatgcaaggtgcactcgatcagtttcaatagttcctccg 2748
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 521 acaaataatttatgctacacgtatgcaaggtgcactcgatcagtttccatagttcctccg 462
Query: 2749 gcatattatg-cacacttagctgcttttcgagctcgcagctatatcgaaggcgaatcgga 2807
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gcatattatgccacacttagctgcttttcgagctcgcagctatatcgaaggcgaatcgga 402
Query: 2808 aatgggttctgctagtgcgggtgctggtggtgcaaccaggagcaatgttgagataaaatt 2867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aatgggttctgctagtgcgggtgctggtggtgcaaccaggagcaatgttgagataaaatt 342
Query: 2868 gcctg-caatcaaggataatgtgaaagatgttatgttctactgctga 2913
||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct: 341 gcctgccactcacggataatgtgaaagatgttatgttctactgctga 295
>KMC006488A_C01 KMC006488A_c01
Length = 697
Score = 58.0 bits (29), Expect = 5e-08
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 2061 tacaattatttttggtgcggatgtaacacatccacaaccaggggaagactcaagtccttc 2120
||||||||||||||| || ||||| || |||||||| || ||||| || || ||||| ||
Sbjct: 240 tacaattatttttggggcagatgtcactcatccacatcctggggaggattctagtccatc 299
Query: 2121 tatagctgcagttgtggcttc 2141
||||| || |||||||||||
Sbjct: 300 aatagcagctgttgtggcttc 320
Score = 50.1 bits (25), Expect = 1e-05
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 2329 atattttacagagatggtgtcagtgaaggtcaatttagtcaggttttgttgtatgagatg 2388
||||||||||| |||||||| |||||||| || ||| ||| ||||| |||| |||| |
Sbjct: 505 atattttacagggatggtgtaagtgaagggcagttttatcaagttttattgtttgagctt 564
Query: 2389 gatgcaataagaaaggcttgt 2409
||||| || |||||||||||
Sbjct: 565 gatgctatccgaaaggcttgt 585
>KMC013121A_C01 KMC013121A_c01
Length = 653
Score = 56.0 bits (28), Expect = 2e-07
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 2740 gttcctccggcatattatgcacacttagctgcttttcgagctcg 2783
|||||||| ||||||||||||||||| || || |||||||||||
Sbjct: 573 gttcctccagcatattatgcacacttggccgcatttcgagctcg 530
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9227
Number of Sequences: 8469
Number of extensions: 9227
Number of successful extensions: 2581
Number of sequences better than 1.0e-03: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2572
Number of HSP's gapped (non-prelim): 7
length of query: 2913
length of database: 5,164,774
effective HSP length: 17
effective length of query: 2896
effective length of database: 5,020,801
effective search space: 14540239696
effective search space used: 14540239696
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)