Miyakogusa Predicted Gene
- chr3.CM0282.590.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr3.CM0282.590.nc - phase: 0
(1392 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC002949A_C01 KMC002949A_c01 813 0.0
>KMC002949A_C01 KMC002949A_c01
Length = 568
Score = 813 bits (410), Expect = 0.0
Identities = 410/410 (100%)
Strand = Plus / Minus
Query: 983 tggttgctgaacacactttccggcctccatattatcaccgcaactgcatgagtgaattta 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tggttgctgaacacactttccggcctccatattatcaccgcaactgcatgagtgaattta 509
Query: 1043 tgggtctcatccatggtggctatgaggcgaaggttgatgggtttcttccgggcggtgcaa 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgggtctcatccatggtggctatgaggcgaaggttgatgggtttcttccgggcggtgcaa 449
Query: 1103 gtcttcatagctgtatgactccccacggtcctgatacgaagtcatatgaggccaccattg 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtcttcatagctgtatgactccccacggtcctgatacgaagtcatatgaggccaccattg 389
Query: 1163 cgcgtgggaatgatgtaggacctaacaagatcactgacacgatggcttttatgtttgagt 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cgcgtgggaatgatgtaggacctaacaagatcactgacacgatggcttttatgtttgagt 329
Query: 1223 cgtgtttgatacctcgcattagtcgatgggctctcgaatcaccattcttggaccatgatt 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cgtgtttgatacctcgcattagtcgatgggctctcgaatcaccattcttggaccatgatt 269
Query: 1283 attaccaatgttggattggcctgagatctcatttcaatgttacagagatatctcctagaa 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 attaccaatgttggattggcctgagatctcatttcaatgttacagagatatctcctagaa 209
Query: 1343 ccccaaccttggatagtgaaacggttgctggcgacacaaaatccagctag 1392
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ccccaaccttggatagtgaaacggttgctggcgacacaaaatccagctag 159
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3932
Number of Sequences: 8469
Number of extensions: 3932
Number of successful extensions: 1058
Number of sequences better than 1.0e-03: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1057
Number of HSP's gapped (non-prelim): 1
length of query: 1392
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1375
effective length of database: 5,020,801
effective search space: 6903601375
effective search space used: 6903601375
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)