Miyakogusa Predicted Gene
- chr3.CM0282.1080.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr3.CM0282.1080.nc + phase: 0
(1719 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC003316A_C01 KMC003316A_c01 553 e-157
KMC011601A_C01 KMC011601A_c01 107 4e-23
>KMC003316A_C01 KMC003316A_c01
Length = 622
Score = 553 bits (279), Expect = e-157
Identities = 282/283 (99%)
Strand = Plus / Minus
Query: 1191 ttttgatgatgtaccagaagccttggaaaagtggcatgccttgggcataaaggtatacat 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttttgatgatgtaccagaagccttggaaaagtggcatgccttgggcataaaggtatacat 563
Query: 1251 atattctagtggtagcaggttggcgcaaaggctaatatttggacatacaaaccatgggga 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atattctagtggtagcaggttggcgcaaaggctaatatttggacatacaaaccatgggga 503
Query: 1311 cctaagaaaatatttatctgggttttttgataccacagtggggaacaaaagagaaacaca 1370
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 502 cctaagaaaatatttatctgggttttttgataccacagtggggaaccaaagagaaacaca 443
Query: 1371 cagttatgttgaaatttctgcatcacttggcgttgataagccatcagatatcttatttgt 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cagttatgttgaaatttctgcatcacttggcgttgataagccatcagatatcttatttgt 383
Query: 1431 aactgatgtttttcaagaagctacagctgctaaagcagcaggt 1473
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aactgatgtttttcaagaagctacagctgctaaagcagcaggt 340
>KMC011601A_C01 KMC011601A_c01
Length = 494
Score = 107 bits (54), Expect = 4e-23
Identities = 118/138 (85%), Gaps = 1/138 (0%)
Strand = Plus / Minus
Query: 1337 ttgataccacagtggggaacaaaagagaaacacacagttatgttgaaatttctgcatcac 1396
|||||||| |||||||| || |||||| |||| ||||| |||||||||||| ||||
Sbjct: 488 ttgataccgcagtggggtacggaagagagacacgaagttacgttgaaatttctcagtcac 429
Query: 1397 ttggcgttgataagccatcagatatcttatttgtaactgatgtttttcaagaag-ctaca 1455
|||| ||||||||| | |||||||| ||||| || |||||||| |||||||||| |||||
Sbjct: 428 ttggtgttgataagtcgtcagatattttattcgtcactgatgtgtttcaagaagcctaca 369
Query: 1456 gctgctaaagcagcaggt 1473
|||||||| |||||||||
Sbjct: 368 gctgctaaggcagcaggt 351
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6148
Number of Sequences: 8469
Number of extensions: 6148
Number of successful extensions: 1645
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1642
Number of HSP's gapped (non-prelim): 2
length of query: 1719
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1702
effective length of database: 5,020,801
effective search space: 8545403302
effective search space used: 8545403302
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)