Miyakogusa Predicted Gene
- chr3.CM0176.40.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr3.CM0176.40.nc + phase: 0
(1926 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC019736A_C01 KMC019736A_c01 618 e-177
KMC009607A_C01 KMC009607A_c01 507 e-143
>KMC019736A_C01 KMC019736A_c01
Length = 554
Score = 618 bits (312), Expect = e-177
Identities = 312/312 (100%)
Strand = Plus / Plus
Query: 1 atggctggattgttgcttggtgatatctctcatcatggatcatatcaaagtggttcacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 atggctggattgttgcttggtgatatctctcatcatggatcatatcaaagtggttcacaa 302
Query: 61 ggaggctctcaggacaatcaagagtatggttctcgttggtacttttctaggaaggagatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ggaggctctcaggacaatcaagagtatggttctcgttggtacttttctaggaaggagatc 362
Query: 121 gaagaaaattcaccttccaaacaagacggtgtagatttgaagaaagaagcttacctacgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gaagaaaattcaccttccaaacaagacggtgtagatttgaagaaagaagcttacctacgc 422
Query: 181 aaatcatactgtacatttctacaagacctaggcatgagacttaaagtacctcaggtaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaatcatactgtacatttctacaagacctaggcatgagacttaaagtacctcaggtaact 482
Query: 241 attgccacagcaataattttttgtcatcggttctttcttcggcaatcccatgcaaagaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 attgccacagcaataattttttgtcatcggttctttcttcggcaatcccatgcaaagaat 542
Query: 301 gacaggaggatc 312
||||||||||||
Sbjct: 543 gacaggaggatc 554
>KMC009607A_C01 KMC009607A_c01
Length = 497
Score = 507 bits (256), Expect = e-143
Identities = 259/260 (99%)
Strand = Plus / Minus
Query: 1667 atgaagcagatttaagtgctgtagaagaaggggaggtgtctgcacttgatgacattgacc 1726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atgaagcagatttaagtgctgtagaagaaggggaggtgtctgcacttgatgacattgacc 438
Query: 1727 tgggacccaagtcaagcaaccagaagagaaaagtagagagctcccctgataattttgtgg 1786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgggacccaagtcaagcaaccagaagagaaaagtagagagctcccctgataattttgtgg 378
Query: 1787 aggggaaaaagcggcataattatggttccggatctacccaccataatcgcattgattata 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aggggaaaaagcggcataattatggttccggatctacccaccataatcgcattgattata 318
Query: 1847 tagaagatcgaaacaaggtcaaccggctgggacatgctgagagggacagcaaaaggcata 1906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tagaagatcgaaacaaggtcaaccggctgggacatgctgagagggacagcaaaaggcata 258
Query: 1907 tacaggaaaaccaagtttga 1926
|||||||||||| |||||||
Sbjct: 257 tacaggaaaacccagtttga 238
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7839
Number of Sequences: 8469
Number of extensions: 7839
Number of successful extensions: 2202
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2200
Number of HSP's gapped (non-prelim): 2
length of query: 1926
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1909
effective length of database: 5,020,801
effective search space: 9584709109
effective search space used: 9584709109
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)