Miyakogusa Predicted Gene

chr3.CM0135.290.nd
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr3.CM0135.290.nd - phase: 0 /partial
         (922 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC010516A_C01 KMC010516A_c01                                         309   3e-84

>KMC010516A_C01 KMC010516A_c01
          Length = 521

 Score =  309 bits (156), Expect = 3e-84
 Identities = 156/156 (100%)
 Strand = Plus / Minus

                                                                       
Query: 767 cagcaacagtgactttgtctagtgatattggtagagttaaccgtgcttccacaaaaagtg 826
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cagcaacagtgactttgtctagtgatattggtagagttaaccgtgcttccacaaaaagtg 462

                                                                       
Query: 827 cagtcaaacttcaagagattggtcccaggatgactcttcaactagttaggatcgagaagg 886
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cagtcaaacttcaagagattggtcccaggatgactcttcaactagttaggatcgagaagg 402

                                               
Query: 887 gactgtgttccggtgaagtcctcttcagcgaatatg 922
           ||||||||||||||||||||||||||||||||||||
Sbjct: 401 gactgtgttccggtgaagtcctcttcagcgaatatg 366


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3411
Number of Sequences: 8469
Number of extensions: 3411
Number of successful extensions: 956
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 955
Number of HSP's gapped (non-prelim): 1
length of query: 922
length of database: 5,164,774
effective HSP length: 16
effective length of query: 906
effective length of database: 5,029,270
effective search space: 4556518620
effective search space used: 4556518620
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)