Miyakogusa Predicted Gene
- chr3.CM0127.630.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr3.CM0127.630.nc - phase: 0
(2697 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC000440A_C02 KMC000440A_c02 718 0.0
>KMC000440A_C02 KMC000440A_c02
Length = 636
Score = 718 bits (362), Expect = 0.0
Identities = 368/370 (99%)
Strand = Plus / Minus
Query: 2328 gttaaatgaaaagcttgatgaacttcaggctgttctgaaggagctaagaacggatttgga 2387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gttaaatgaaaagcttgatgaacttcaggctgttctgaaggagctaagaacggatttgga 577
Query: 2388 cagggctaggaaaggaaagcccccttcaaagagtccagatggaaagaagaagaagaactt 2447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cagggctaggaaaggaaagcccccttcaaagagtccagatggaaagaagaagaagaactt 517
Query: 2448 gtcttccgaagcgctagagaaaaagatatctcaaaccaatgcaaagattgagaaaatgca 2507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtcttccgaagcgctagagaaaaagatatctcaaaccaatgcaaagattgagaaaatgca 457
Query: 2508 gcgtgatatgaagacaaaagaagatctcaaaactgtggcattaggcacatccaagataaa 2567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gcgtgatatgaagacaaaagaagatctcaaaactgtggcattaggcacatccaagataaa 397
Query: 2568 ctaccttgatcccaggattacagtcgcctggtgcaagagacacgaggttcctattgaaaa 2627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctaccttgatcccaggattacagtcgcctggtgcaagagacacgaggttcctattgaaaa 337
Query: 2628 gattttcaacaagtctctgctggcaaagttcacttgggctatggatgtggaccctgactt 2687
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 336 gattttcaaccagtctctgctggccaagttcacttgggctatggatgtggaccctgactt 277
Query: 2688 cagattctga 2697
||||||||||
Sbjct: 276 cagattctga 267
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,855
Number of Sequences: 8469
Number of extensions: 12855
Number of successful extensions: 4205
Number of sequences better than 1.0e-03: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4204
Number of HSP's gapped (non-prelim): 1
length of query: 2697
length of database: 5,164,774
effective HSP length: 17
effective length of query: 2680
effective length of database: 5,020,801
effective search space: 13455746680
effective search space used: 13455746680
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)