Miyakogusa Predicted Gene

chr3.CM0127.50.nc
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr3.CM0127.50.nc + phase: 0 
         (4020 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC001069A_C01 KMC001069A_c01                                         418   e-116
KMC000695A_C01 KMC000695A_c01                                          48   7e-05

>KMC001069A_C01 KMC001069A_c01
          Length = 522

 Score =  418 bits (211), Expect = e-116
 Identities = 211/211 (100%)
 Strand = Plus / Minus

                                                                        
Query: 3810 tgctgggacagctgacaagaaaaataaccaggaaaagactccagatttattggaagatga 3869
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522  tgctgggacagctgacaagaaaaataaccaggaaaagactccagatttattggaagatga 463

                                                                        
Query: 3870 gaaaaagaatgacactgacagtgttgctgcatctctttccttatctctatccttcccctc 3929
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462  gaaaaagaatgacactgacagtgttgctgcatctctttccttatctctatccttcccctc 403

                                                                        
Query: 3930 ttcagacaaggaacaaatcagacctgtttcagaatctgatcaacatgtgaatgctccttt 3989
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402  ttcagacaaggaacaaatcagacctgtttcagaatctgatcaacatgtgaatgctccttt 343

                                           
Query: 3990 gctcctctttgggaaattcacagacaaataa 4020
            |||||||||||||||||||||||||||||||
Sbjct: 342  gctcctctttgggaaattcacagacaaataa 312


>KMC000695A_C01 KMC000695A_c01
          Length = 628

 Score = 48.1 bits (24), Expect = 7e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 3973 catgtgaatgctcctttgctcctctttgggaaattcacagacaaataa 4020
            ||||||||| | || || ||||| ||||||| ||||||||||||||||
Sbjct: 349  catgtgaataccccgtttctcctttttgggagattcacagacaaataa 302


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,709
Number of Sequences: 8469
Number of extensions: 15709
Number of successful extensions: 4380
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4375
Number of HSP's gapped (non-prelim): 5
length of query: 4020
length of database: 5,164,774
effective HSP length: 17
effective length of query: 4003
effective length of database: 5,020,801
effective search space: 20098266403
effective search space used: 20098266403
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 23 (46.1 bits)