Miyakogusa Predicted Gene

chr3.CM0127.280.nc

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr3.CM0127.280.nc + phase: 0 
         (2514 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC006268A_C01 KMC006268A_c01                                         555   e-158
KMC002756A_C01 KMC002756A_c01                                         153   1e-36
KMC001615A_C05 KMC001615A_c05                                          66   2e-10

>KMC006268A_C01 KMC006268A_c01
          Length = 571

 Score =  555 bits (280), Expect = e-158
 Identities = 280/280 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcgtcaaaatccagatccaatctatctgaaaatcccaacaaagcatcactggcaacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 atggcgtcaaaatccagatccaatctatctgaaaatcccaacaaagcatcactggcaacg 351

                                                                       
Query: 61  ccgagagtcagtaaagttagaaaggtagtgtcaaaatcacaatctgattcaccatcacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ccgagagtcagtaaagttagaaaggtagtgtcaaaatcacaatctgattcaccatcacct 411

                                                                       
Query: 121 ctgcaaaattcacgcccttctgtggaacggtcgccgcgatctgtgaactcaaagcccact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ctgcaaaattcacgcccttctgtggaacggtcgccgcgatctgtgaactcaaagcccact 471

                                                                       
Query: 181 gttgagcggaaatcaccaagacctccatccaccccacctgataaacaagccccaaaagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gttgagcggaaatcaccaagacctccatccaccccacctgataaacaagccccaaaagca 531

                                                   
Query: 241 gaaaagggtttagaattgcagaaccagttgaatcttcttc 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gaaaagggtttagaattgcagaaccagttgaatcttcttc 571


>KMC002756A_C01 KMC002756A_c01
          Length = 635

 Score =  153 bits (77), Expect = 1e-36
 Identities = 128/145 (88%)
 Strand = Plus / Minus

                                                                        
Query: 2198 atgtgaatgggaaagtgaaggaagatgagagcaaagaaaaagatgacccggtagaagttg 2257
            |||||||||| ||| |||||||||||||||||| |||||||  |||  | |||||||  |
Sbjct: 630  atgtgaatggaaaactgaaggaagatgagagcagagaaaaaagtgattcagtagaagggg 571

                                                                        
Query: 2258 aatttaaaatgtgggagagctgcaagatagagaaaaaggagttctcaccagagagagaac 2317
            |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 570  aatttaaaatgtgggaaagctgcacgatagagaaaaaggagttctcaccagagagagtac 511

                                     
Query: 2318 cagagcctgaatcatttgaagagga 2342
            || |||||| ||| | |||||||||
Sbjct: 510  caaagcctgtatcctatgaagagga 486



 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 68/77 (88%)
 Strand = Plus / Minus

                                                                        
Query: 2431 caacaattgaagaagaagaagaaagctctgcttggcaagtttggaagcctgctcaagaaa 2490
            |||||| |||||||||||||||| ||| ||||||  ||||||||||||||||| ||||||
Sbjct: 385  caacaagtgaagaagaagaagaaggctttgcttgttaagtttggaagcctgctgaagaaa 326

                             
Query: 2491 aagagtactagcaacca 2507
            ||| ||  |||||||||
Sbjct: 325  aagggtggtagcaacca 309


>KMC001615A_C05 KMC001615A_c05
          Length = 589

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                       
Query: 355 aaagaagcacagagagtggttgaggaagcaaatgagaaacacagggaagcattggtggct 414
           ||||||||||| |||||   | ||||||||||||||||||  | ||| ||||||||||||
Sbjct: 351 aaagaagcacaaagagtaactaaggaagcaaatgagaaacttatggaggcattggtggct 292

                            
Query: 415 caaaagcgggctgagga 431
           ||||| |||| ||||||
Sbjct: 291 caaaaacgggttgagga 275


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,736
Number of Sequences: 8469
Number of extensions: 13736
Number of successful extensions: 4233
Number of sequences better than 1.0e-03: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4224
Number of HSP's gapped (non-prelim): 7
length of query: 2514
length of database: 5,164,774
effective HSP length: 17
effective length of query: 2497
effective length of database: 5,020,801
effective search space: 12536940097
effective search space used: 12536940097
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)