Miyakogusa Predicted Gene
- chr3.CM0091.630.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr3.CM0091.630.nd + phase: 0
(492 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC009175A_C01 KMC009175A_c01 178 3e-45
>KMC009175A_C01 KMC009175A_c01
Length = 702
Score = 178 bits (90), Expect = 3e-45
Identities = 227/272 (83%), Gaps = 3/272 (1%)
Strand = Plus / Plus
Query: 13 gatgttgagtaccgttgcttcgttggtgggctcgcctgggccactgacagcgaaggcttg 72
||||||||||||||||||||||| ||||| || |||||| |||| || ||| | | |
Sbjct: 57 gatgttgagtaccgttgcttcgtcggtggtcttgcctggaccaccgatagccataccctt 116
Query: 73 gagaaagctttctctacctatggcgaaattgttgattcgaaggttgtgaacgatcgtgag 132
||| |||||||||| |||| |||||||| ||||||| |||||||| ||||||||||||
Sbjct: 117 gagcaagctttctcctcctacggcgaaatcattgattctaaggttgtcaacgatcgtgag 176
Query: 133 actggaagatctaggggattcggattcgtgacgttcgcgtcggagcagtcgatgaaggat 192
|||||||| || |||||||| ||||||||||| ||| | || ||| || | |||| |
Sbjct: 177 actggaaggtcaaggggatttggattcgtgaccttcacttctgaggaggctatgaggagc 236
Query: 193 gcgatcgaggggatgaacggccaggacattgacggccgtaatgttaccgtgaatgaagcc 252
||||||||||||||||||||| | || ||||||||||||| | || ||||||||||||
Sbjct: 237 gcgatcgaggggatgaacggcaatgagcttgacggccgtaacatcactgtgaatgaagcc 296
Query: 253 caggctcgcggccgtggaggcggcggcggtgg 284
|||||||||||| |||||||||||||||||
Sbjct: 297 caggctcgcggc---ggaggcggcggcggtgg 325
Score = 46.1 bits (23), Expect = 3e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 294 cggcggtggtcgtcgtgaaggtggata 320
|||||| ||||||||||||||||||||
Sbjct: 353 cggcggcggtcgtcgtgaaggtggata 379
Score = 46.1 bits (23), Expect = 3e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 298 ggtggtcgtcgtgaaggtggata 320
|||||||||||||||||||||||
Sbjct: 453 ggtggtcgtcgtgaaggtggata 475
Score = 42.1 bits (21), Expect = 5e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 396 cggcggtcgtcgtgaaggtgg 416
|||||||||||||||||||||
Sbjct: 356 cggcggtcgtcgtgaaggtgg 376
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1792
Number of Sequences: 8469
Number of extensions: 1792
Number of successful extensions: 753
Number of sequences better than 1.0e-03: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 738
Number of HSP's gapped (non-prelim): 14
length of query: 492
length of database: 5,164,774
effective HSP length: 16
effective length of query: 476
effective length of database: 5,029,270
effective search space: 2393932520
effective search space used: 2393932520
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)