Miyakogusa Predicted Gene
- chr2.LjT47E17.80.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr2.LjT47E17.80.nc - phase: 0
(4020 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC002836A_C01 KMC002836A_c01 874 0.0
>KMC002836A_C01 KMC002836A_c01
Length = 553
Score = 874 bits (441), Expect = 0.0
Identities = 441/441 (100%)
Strand = Plus / Minus
Query: 3580 tgtataagagaagcttcaaaactgcttcacacatggagactatcagaaactacactttat 3639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgtataagagaagcttcaaaactgcttcacacatggagactatcagaaactacactttat 494
Query: 3640 gttacacttgagccctgtccaatgtgtgctggtgccattcttcaggcaagagtagatact 3699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gttacacttgagccctgtccaatgtgtgctggtgccattcttcaggcaagagtagatact 434
Query: 3700 gttgtgtggggagctcccaataagcttcttggagctgatggtagctggattaggcttttc 3759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gttgtgtggggagctcccaataagcttcttggagctgatggtagctggattaggcttttc 374
Query: 3760 cctgatggaggacaaaatgtctcggaaccaagagatattcaacctgccccagttcatcca 3819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cctgatggaggacaaaatgtctcggaaccaagagatattcaacctgccccagttcatcca 314
Query: 3820 ttccatccaaatatcaaaataagacgaggggtattggcaactgagtgtgccaatgaaatg 3879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttccatccaaatatcaaaataagacgaggggtattggcaactgagtgtgccaatgaaatg 254
Query: 3880 cagcaattctttcagctgagaaggaaaaagaataaagaagagtcatcaaaggaacactct 3939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cagcaattctttcagctgagaaggaaaaagaataaagaagagtcatcaaaggaacactct 194
Query: 3940 cgccttgctgttactcaccaccatccctccaagttacttaacaagatacaggacatgttc 3999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cgccttgctgttactcaccaccatccctccaagttacttaacaagatacaggacatgttc 134
Query: 4000 cacgtaatgttctgtttgtaa 4020
|||||||||||||||||||||
Sbjct: 133 cacgtaatgttctgtttgtaa 113
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,310
Number of Sequences: 8469
Number of extensions: 17310
Number of successful extensions: 4889
Number of sequences better than 1.0e-03: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4888
Number of HSP's gapped (non-prelim): 1
length of query: 4020
length of database: 5,164,774
effective HSP length: 17
effective length of query: 4003
effective length of database: 5,020,801
effective search space: 20098266403
effective search space used: 20098266403
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 23 (46.1 bits)