Miyakogusa Predicted Gene

chr2.LjT16L14.40.nc
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr2.LjT16L14.40.nc + phase: 0 
         (666 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC002460A_C01 KMC002460A_c01                                         256   2e-68

>KMC002460A_C01 KMC002460A_c01
          Length = 415

 Score =  256 bits (129), Expect = 2e-68
 Identities = 132/133 (99%)
 Strand = Plus / Minus

                                                                       
Query: 534 atctttgtctggatcaacaaaagtagaagatctttcatcagggtcacacgatgccgatgc 593
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 atctttgtctggatcaaccaaagtagaagatctttcatcagggtcacacgatgccgatgc 356

                                                                       
Query: 594 taagcctaagattaataactctggtgggggattactgggcttggcatatgctagctctga 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 taagcctaagattaataactctggtgggggattactgggcttggcatatgctagctctga 296

                        
Query: 654 cgatgatgaatga 666
           |||||||||||||
Sbjct: 295 cgatgatgaatga 283


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2165
Number of Sequences: 8469
Number of extensions: 2165
Number of successful extensions: 612
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 1
length of query: 666
length of database: 5,164,774
effective HSP length: 16
effective length of query: 650
effective length of database: 5,029,270
effective search space: 3269025500
effective search space used: 3269025500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)