Miyakogusa Predicted Gene
- chr2.CM0749.240.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr2.CM0749.240.nd - phase: 0 /partial
(2520 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC001352A_C01 KMC001352A_c01 295 1e-79
KMC001020A_C01 KMC001020A_c01 80 1e-14
>KMC001352A_C01 KMC001352A_c01
Length = 497
Score = 295 bits (149), Expect = 1e-79
Identities = 164/169 (97%)
Strand = Plus / Minus
Query: 2232 gaagactgtggagttctctgatgatagagttgttaggtttcaattgccaagagacgttat 2291
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 497 gaagactgtggagttctctgatgatagagttgttaggtttccattgcccagagacgttat 438
Query: 2292 tggtgatgatggtgctgaaaccacctctgtggatccagtggaagaaaatgccagggcgga 2351
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 437 tggtgatgatggtgctgaaaccacctctgtggatcccgtggaagaaaatgcccgggcgga 378
Query: 2352 acatggagatgaagatggaagcagattccatgagattgaaaatgataat 2400
|| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acctggagatgaagatggaagcagattccatgagattgaaaatgataat 329
Score = 103 bits (52), Expect = 8e-22
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 2465 atgaggatcctggtgaggtgtctattggcaagaagatttataaattttttacaaca 2520
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 264 atgaggatcctggtgaggtgtctattggccagaagatttataaattttttacaaca 209
>KMC001020A_C01 KMC001020A_c01
Length = 576
Score = 79.8 bits (40), Expect = 1e-14
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 151 aaccatagagaaaataaggtcggaaaagaagagcaggctttgagtaagaaggctgagaga 210
||||||||| |||| ||||||||| |||||||||| ||||||||||||||| |||||||
Sbjct: 235 aaccatagataaaagaaggtcggataagaagagcatgctttgagtaagaagagtgagaga 176
Query: 211 ataaagga 218
|| |||||
Sbjct: 175 atgaagga 168
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,391
Number of Sequences: 8469
Number of extensions: 11391
Number of successful extensions: 3363
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3359
Number of HSP's gapped (non-prelim): 4
length of query: 2520
length of database: 5,164,774
effective HSP length: 17
effective length of query: 2503
effective length of database: 5,020,801
effective search space: 12567064903
effective search space used: 12567064903
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)