Miyakogusa Predicted Gene
- chr2.CM0545.100.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr2.CM0545.100.nd + phase: 0
(4104 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC001083A_C01 KMC001083A_c01 795 0.0
>KMC001083A_C01 KMC001083A_c01
Length = 689
Score = 795 bits (401), Expect = 0.0
Identities = 411/413 (99%), Gaps = 1/413 (0%)
Strand = Plus / Minus
Query: 3693 acagattgaaggagcttttgttcagggattaggatttttcatgcttgaagaatatgaaac 3752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 acagattgaaggagcttttgttcagggattaggatttttcatgcttgaagaatatgaaac 630
Query: 3753 aaatcttgatggtttggtcttggcagacgggacatggaattacaaaatacccacaataga 3812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aaatcttgatggtttggtcttggcagacgggacatggaattacaaaatacccacaataga 570
Query: 3813 tactattcctctacagtttaatgttcaaatcctcaatagtgggcatca-ccagcatcgtg 3871
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 569 tactattcctctacagtttaatgttcaaatcctcaatagtgggcatcagccagcatcgtg 510
Query: 3872 ttctctcttcaaaggcttctggtgagccacctctacttttagcagcttctgttcactgtg 3931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttctctcttcaaaggcttctggtgagccacctctacttttagcagcttctgttcactgtg 450
Query: 3932 ccacaagagcagctatcaaagaagcaaggaaacagcttctgtcatggagcaacttagatg 3991
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 449 ccacaagagcagctatcaaagaagcaaggaaacagcttctgtcatggagccacttagatg 390
Query: 3992 gaccagattcaacatttcagttggaggtccctgcaaccatgccggtggtaaaagaactca 4051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaccagattcaacatttcagttggaggtccctgcaaccatgccggtggtaaaagaactca 330
Query: 4052 ttggactggacattgtagaaagatacttgaaatggaaaatgggcatggcgtaa 4104
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttggactggacattgtagaaagatacttgaaatggaaaatgggcatggcgtaa 277
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,405
Number of Sequences: 8469
Number of extensions: 15405
Number of successful extensions: 4246
Number of sequences better than 1.0e-03: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4243
Number of HSP's gapped (non-prelim): 2
length of query: 4104
length of database: 5,164,774
effective HSP length: 17
effective length of query: 4087
effective length of database: 5,020,801
effective search space: 20520013687
effective search space used: 20520013687
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 23 (46.1 bits)