Miyakogusa Predicted Gene

chr2.CM0304.780.nc

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr2.CM0304.780.nc - phase: 0 
         (1011 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC005579A_C01 KMC005579A_c01                                         642   0.0  

>KMC005579A_C01 KMC005579A_c01
          Length = 524

 Score =  642 bits (324), Expect = 0.0
 Identities = 324/324 (100%)
 Strand = Plus / Minus

                                                                        
Query: 688  agggcggtgtctgcacctgagaagactttgttggagcttattcctgctaaggatctcacc 747
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524  agggcggtgtctgcacctgagaagactttgttggagcttattcctgctaaggatctcacc 465

                                                                        
Query: 748  atgcatgtagctggcggagttggcgatgctgctgctggcacaccgtgtgagaaggaggtt 807
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464  atgcatgtagctggcggagttggcgatgctgctgctggcacaccgtgtgagaaggaggtt 405

                                                                        
Query: 808  ccgaagttgtttggggtttcaattgggctgaaacgacataggatagagtgtgaggttgaa 867
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404  ccgaagttgtttggggtttcaattgggctgaaacgacataggatagagtgtgaggttgaa 345

                                                                        
Query: 868  gaagagagagaggaaaggaatcaaaattcgcaaatgcaatcctcctcgcaggaacctgat 927
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344  gaagagagagaggaaaggaatcaaaattcgcaaatgcaatcctcctcgcaggaacctgat 285

                                                                        
Query: 928  ggtgggtctgatatgaagtctggacaacctgttgatggtgatgactcggctgatcaggag 987
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284  ggtgggtctgatatgaagtctggacaacctgttgatggtgatgactcggctgatcaggag 225

                                    
Query: 988  ccttggttggagcttgggaaatga 1011
            ||||||||||||||||||||||||
Sbjct: 224  ccttggttggagcttgggaaatga 201


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2962
Number of Sequences: 8469
Number of extensions: 2962
Number of successful extensions: 843
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 842
Number of HSP's gapped (non-prelim): 1
length of query: 1011
length of database: 5,164,774
effective HSP length: 16
effective length of query: 995
effective length of database: 5,029,270
effective search space: 5004123650
effective search space used: 5004123650
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)