Miyakogusa Predicted Gene

chr2.CM0304.560.nd
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr2.CM0304.560.nd + phase: 0 
         (1488 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC014822A_C01 KMC014822A_c01                                         385   e-107

>KMC014822A_C01 KMC014822A_c01
          Length = 902

 Score =  385 bits (194), Expect = e-107
 Identities = 201/202 (99%), Gaps = 1/202 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1141 tggggtggcatttcttctgaggagcatgatgaagcagttatgcttgaggcagcaatgttt 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1    tggggtggcatttcttctgaggagcatgatgaagcagttatgcttgaggcagcaatgtt- 59

                                                                        
Query: 1201 ggtggaatccccgaagggcgtcagtatccctatgcttttgcaccacatgagttcatgcag 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60   ggtggaatccccgaagggcgtcagtatccctatgcttttgcaccacatgagttcatgcag 119

                                                                        
Query: 1261 aacaggggtatttatcctcggccaatgcctcgtccaccttcgccatcattgacagctcag 1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120  aacaggggtatttatcctcggccaatgcctcgtccaccttcgccatcattgacagctcag 179

                                  
Query: 1321 cgtttaataagggaacaacagg 1342
            ||||||||||||||||||||||
Sbjct: 180  cgtttaataagggaacaacagg 201



 Score =  256 bits (129), Expect = 5e-68
 Identities = 129/129 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1339 caggatgatgaatatcttgcatcactacaagcagatagagaaaaagaattgaaagccatc 1398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282  caggatgatgaatatcttgcatcactacaagcagatagagaaaaagaattgaaagccatc 341

                                                                        
Query: 1399 gaagaagccgaggctgctcgtgaagaagaaaagcggagagaggaagaagctcgcaggaaa 1458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342  gaagaagccgaggctgctcgtgaagaagaaaagcggagagaggaagaagctcgcaggaaa 401

                     
Query: 1459 ttacaggaa 1467
            |||||||||
Sbjct: 402  ttacaggaa 410


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5732
Number of Sequences: 8469
Number of extensions: 5732
Number of successful extensions: 1648
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1645
Number of HSP's gapped (non-prelim): 2
length of query: 1488
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1471
effective length of database: 5,020,801
effective search space: 7385598271
effective search space used: 7385598271
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)