Miyakogusa Predicted Gene

chr2.CM0304.1000.nc
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr2.CM0304.1000.nc + phase: 0 
         (1818 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC004470A_C01 KMC004470A_c01                                         605   e-173

>KMC004470A_C01 KMC004470A_c01
          Length = 559

 Score =  605 bits (305), Expect = e-173
 Identities = 305/305 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1514 gacataatgaccgttatcagctggaatgtgtttcctgtggtaattcctggtatgcctccc 1573
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559  gacataatgaccgttatcagctggaatgtgtttcctgtggtaattcctggtatgcctccc 500

                                                                        
Query: 1574 gggatgaggtatcttcgctaaccatagatggatcagattcaaagaaaagcataggcacag 1633
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499  gggatgaggtatcttcgctaaccatagatggatcagattcaaagaaaagcataggcacag 440

                                                                        
Query: 1634 cgccatgggccactgcaaaatttgaagttattcagaagaagctgctgagcccccgcgaat 1693
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439  cgccatgggccactgcaaaatttgaagttattcagaagaagctgctgagcccccgcgaat 380

                                                                        
Query: 1694 ctgaaaactcagccaatgatatatctgggaaaacaaatgaattgggtatcgccgttaatg 1753
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379  ctgaaaactcagccaatgatatatctgggaaaacaaatgaattgggtatcgccgttaatg 320

                                                                        
Query: 1754 acacccagaaaccaattggcatgcccaagaaagatgagaatgttgaggctacacatgcag 1813
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319  acacccagaaaccaattggcatgcccaagaaagatgagaatgttgaggctacacatgcag 260

                 
Query: 1814 actag 1818
            |||||
Sbjct: 259  actag 255


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6807
Number of Sequences: 8469
Number of extensions: 6807
Number of successful extensions: 2041
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2040
Number of HSP's gapped (non-prelim): 1
length of query: 1818
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1801
effective length of database: 5,020,801
effective search space: 9042462601
effective search space used: 9042462601
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)