Miyakogusa Predicted Gene

chr2.CM0153.40.nc
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr2.CM0153.40.nc - phase: 0 
         (2349 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC010834A_C01 KMC010834A_c01                                         172   1e-42
KMC000902A_C03 KMC000902A_c03                                         101   3e-21
KMC008331A_C02 KMC008331A_c02                                          44   6e-04

>KMC010834A_C01 KMC010834A_c01
          Length = 441

 Score =  172 bits (87), Expect = 1e-42
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcgagtcggaaggaggacgagaaaaacgagcgcgtcattcgaggtctgctcaagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 atggcgagtcggaaggaggacgagaaaaacgagcgcgtcattcgaggtctgctcaagctt 414

                                      
Query: 61  gaatcgaatcggaggtgcattaactgc 87
           |||||||||||||||||||||||||||
Sbjct: 415 gaatcgaatcggaggtgcattaactgc 441


>KMC000902A_C03 KMC000902A_c03
          Length = 632

 Score =  101 bits (51), Expect = 3e-21
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                        
Query: 2275 cagcagccggctggtaggtttccaatcacttnnnnnnntaacaccttccctgctggaggg 2334
            ||||||||||||||||||||||| |||||||       ||||||||||||||||||||||
Sbjct: 632  cagcagccggctggtaggtttccnatcacttccccccctaacaccttccctgctggaggg 573

                           
Query: 2335 aacccattcggataa 2349
            |||||||||||||||
Sbjct: 572  aacccattcggataa 558


>KMC008331A_C02 KMC008331A_c02
          Length = 697

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 2132 ctgcacaagcacaagctcatgc 2153
            ||||||||||||||||||||||
Sbjct: 498  ctgcacaagcacaagctcatgc 477


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6995
Number of Sequences: 8469
Number of extensions: 6995
Number of successful extensions: 1885
Number of sequences better than 1.0e-03: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1881
Number of HSP's gapped (non-prelim): 3
length of query: 2349
length of database: 5,164,774
effective HSP length: 17
effective length of query: 2332
effective length of database: 5,020,801
effective search space: 11708507932
effective search space used: 11708507932
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)