Miyakogusa Predicted Gene

chr2.CM0102.210.nd
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr2.CM0102.210.nd - phase: 1 /partial
         (1021 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC001231A_C01 KMC001231A_c01                                         375   e-104

>KMC001231A_C01 KMC001231A_c01
          Length = 563

 Score =  375 bits (189), Expect = e-104
 Identities = 198/201 (98%)
 Strand = Plus / Minus

                                                                        
Query: 821  tgacaacttgtcaagatttgattctttccgaacacatgatagtgtatctctacctgcggg 880
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 563  tgacaacttgtcaagatttgattctttccgcacacatgatagtgtatctctacctgcggg 504

                                                                        
Query: 881  ggagacactagcgcgatttgattcaattcgcagcagtgtggattatgatcatggtcatgg 940
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503  ggagacactagcgcgatttgattcaattcgcagcagtgtggattatgatcatggtcatgg 444

                                                                        
Query: 941  ctttccagcttttgatgactcggatccctttggctctgggccgtttaggacttcatcaga 1000
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443  ctttccagcttttgatgactcggatccctttggctctgggccgtttaggacttcatcaga 384

                                 
Query: 1001 aagtcaaactccaagaagagg 1021
            ||||| |||||| ||||||||
Sbjct: 383  aagtccaactcccagaagagg 363


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3876
Number of Sequences: 8469
Number of extensions: 3876
Number of successful extensions: 1089
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1087
Number of HSP's gapped (non-prelim): 2
length of query: 1021
length of database: 5,164,774
effective HSP length: 16
effective length of query: 1005
effective length of database: 5,029,270
effective search space: 5054416350
effective search space used: 5054416350
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)