Miyakogusa Predicted Gene
- chr2.CM0065.210.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr2.CM0065.210.nc + phase: 0
(1551 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC003203A_C01 KMC003203A_c01 565 e-161
>KMC003203A_C01 KMC003203A_c01
Length = 482
Score = 565 bits (285), Expect = e-161
Identities = 292/293 (99%), Gaps = 1/293 (0%)
Strand = Plus / Minus
Query: 1260 tgggaaggctcgttcatggaagcttaaatcactcaacatggaggttgatgataaggtggc 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tgggaaggctcgttcatggaagcttaaatcactcaacatggaggttgatgataaggtggc 423
Query: 1320 tagagctgacccagacaagatgcactcagaatacgaacaattcttaaaggatctggaaga 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tagagctgacccagacaagatgcactcagaatacgaacaattcttaaaggatctggaaga 363
Query: 1380 aaaccccgacctgaggttcaacatatcactgtaccgaaataaagagtaccagccatcaga 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aaaccccgacctgaggttcaacatatcactgtaccgaaataaagagtaccagccatcaga 303
Query: 1440 gatagcatcagtgactgatggggaagagcttccttctgttcccctggaggagctactggc 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gatagcatcagtgactgatggggaagagcttccttctgttcccctggaggagctactggc 243
Query: 1500 tgat-cttgagctgggtgaggacgaagatgaggaggacgacatgatggaataa 1551
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgatgcttgagctgggtgaggacgaagatgaggaggacgacatgatggaataa 190
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5191
Number of Sequences: 8469
Number of extensions: 5191
Number of successful extensions: 1434
Number of sequences better than 1.0e-03: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1432
Number of HSP's gapped (non-prelim): 1
length of query: 1551
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1534
effective length of database: 5,020,801
effective search space: 7701908734
effective search space used: 7701908734
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)