Miyakogusa Predicted Gene
- chr2.CM0056.450.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr2.CM0056.450.nc - phase: 0
(2613 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC004855A_C01 KMC004855A_c01 650 0.0
KMC000414A_C02 KMC000414A_c02 287 3e-77
>KMC004855A_C01 KMC004855A_c01
Length = 534
Score = 650 bits (328), Expect = 0.0
Identities = 337/340 (99%)
Strand = Plus / Plus
Query: 1 atgaaccctttctcctccggcacgcggctcagggatatgattcgagccatacgtgcttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 atgaaccctttctcctccggcacgcggctcagggatatgattcgagccatacgtgcttgc 254
Query: 61 aagactgcagcagaagaacgtgctgttgtaagaaaagaatgtgctgccattcgtgattca 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 255 aagactgcagcagaagaacgtgctgtagtaagaaaagaatgtgctgccattcgtgattca 314
Query: 121 ataaatgcaaacgatcatgactataggcatcgaaatctggctaagctaatgttcatccat 180
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 315 atacatgcaaacgatcatgactataggcatcgaaatctggctaagctaatgtccatccat 374
Query: 181 atgcttggttatcccacacattttggtcaaatggagtgcctcaagttgatagcatctcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atgcttggttatcccacacattttggtcaaatggagtgcctcaagttgatagcatctcca 434
Query: 241 ggatttccagagaagagaataggttatcttggcctcatgttgcttcttgatgaaaggcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ggatttccagagaagagaataggttatcttggcctcatgttgcttcttgatgaaaggcaa 494
Query: 301 gaagttctgatgttggtcaccaattctgtaaaacaagatc 340
||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gaagttctgatgttggtcaccaattctgtaaaacaagatc 534
>KMC000414A_C02 KMC000414A_c02
Length = 612
Score = 287 bits (145), Expect = 3e-77
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 2469 tgggtccataactcaaactttgagagttacaaataaccaacatggaaagaaatctcttgt 2528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tgggtccataactcaaactttgagagttacaaataaccaacatggaaagaaatctcttgt 553
Query: 2529 catgcgcataaggatagcatacaagataaatggcaaagatgcactggaggaaggacaaat 2588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 catgcgcataaggatagcatacaagataaatggcaaagatgcactggaggaaggacaaat 493
Query: 2589 cagtaattttcctcgtgatttatga 2613
|||||||||||||||||||||||||
Sbjct: 492 cagtaattttcctcgtgatttatga 468
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9328
Number of Sequences: 8469
Number of extensions: 9328
Number of successful extensions: 2617
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2615
Number of HSP's gapped (non-prelim): 2
length of query: 2613
length of database: 5,164,774
effective HSP length: 17
effective length of query: 2596
effective length of database: 5,020,801
effective search space: 13033999396
effective search space used: 13033999396
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)