Miyakogusa Predicted Gene

chr2.CM0056.430.nc

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr2.CM0056.430.nc - phase: 0 
         (2148 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC003734A_C01 KMC003734A_c01                                         787   0.0  
KMC001629A_C01 KMC001629A_c01                                         472   e-133

>KMC003734A_C01 KMC003734A_c01
          Length = 684

 Score =  787 bits (397), Expect = 0.0
 Identities = 397/397 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1752 gagacctgttatgattcacagagccattctaggatctgttgagcgcatgtttgccattct 1811
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684  gagacctgttatgattcacagagccattctaggatctgttgagcgcatgtttgccattct 625

                                                                        
Query: 1812 tttagagcactacaagggtaaatggcccttgtggctcagtcctcgtcaagcaattgtatg 1871
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624  tttagagcactacaagggtaaatggcccttgtggctcagtcctcgtcaagcaattgtatg 565

                                                                        
Query: 1872 tcctgtgtcagagaaatcacaagcttatgcactgcaggtgcgagatcagatccaccaagc 1931
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564  tcctgtgtcagagaaatcacaagcttatgcactgcaggtgcgagatcagatccaccaagc 505

                                                                        
Query: 1932 aggatatcacgttgatgctgatacaactgatcggaagattcagaagaaggtacgggaagc 1991
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504  aggatatcacgttgatgctgatacaactgatcggaagattcagaagaaggtacgggaagc 445

                                                                        
Query: 1992 tcaattagcgcagtacaactacatcttggttgttggagaggaggaagctaatacaggaca 2051
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444  tcaattagcgcagtacaactacatcttggttgttggagaggaggaagctaatacaggaca 385

                                                                        
Query: 2052 ggtgagtgtacgggttagagataaagcagaccatagcgttatgagtattgagaatctact 2111
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384  ggtgagtgtacgggttagagataaagcagaccatagcgttatgagtattgagaatctact 325

                                                 
Query: 2112 caaacacttcagcgacgaagttgcagcttttcattga 2148
            |||||||||||||||||||||||||||||||||||||
Sbjct: 324  caaacacttcagcgacgaagttgcagcttttcattga 288


>KMC001629A_C01 KMC001629A_c01
          Length = 550

 Score =  472 bits (238), Expect = e-133
 Identities = 301/322 (93%)
 Strand = Plus / Minus

                                                                        
Query: 1827 gggtaaatggcccttgtggctcagtcctcgtcaagcaattgtatgtcctgtgtcagagaa 1886
            ||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 550  gggtaaatggcccttctggctcagtcctcgtcaagcaattgtatgccctgcgtcagagaa 491

                                                                        
Query: 1887 atcacaagcttatgcactgcaggtgcgagatcagatccaccaagcaggatatcacgttga 1946
            ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490  atcgcatgcttatgcactgcaggtgcgagatcagatccaccaagcaggatatcacgttga 431

                                                                        
Query: 1947 tgctgatacaactgatcggaagattcagaagaaggtacgggaagctcaattagcgcagta 2006
            |||||||||||||||| ||||||||||| ||||||||| ||||| |||||||||  ||||
Sbjct: 430  tgctgatacaactgataggaagattcaggagaaggtacaggaaggtcaattagctgagta 371

                                                                        
Query: 2007 caactacatcttggttgttggagaggaggaagctaatacaggacaggtgagtgtacgggt 2066
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||
Sbjct: 370  caactacatcttggttgttggagaggaggaagctaatgcaggacaggtgagtgtacatgt 311

                                                                        
Query: 2067 tagagataaagcagaccatagcgttatgagtattgagaatctactcaaacacttcagcga 2126
            ||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 310  tagagataaagcagagcatagagtaatgagtattgagaatctactcaaacacttcagcga 251

                                  
Query: 2127 cgaagttgcagcttttcattga 2148
             ||  |||| ||||||||||||
Sbjct: 250  ggagattgctgcttttcattga 229


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6694
Number of Sequences: 8469
Number of extensions: 6694
Number of successful extensions: 1875
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1873
Number of HSP's gapped (non-prelim): 2
length of query: 2148
length of database: 5,164,774
effective HSP length: 17
effective length of query: 2131
effective length of database: 5,020,801
effective search space: 10699326931
effective search space used: 10699326931
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)