Miyakogusa Predicted Gene
- chr2.CM0018.160.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr2.CM0018.160.nd - phase: 0 /partial
(798 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC015124A_C01 KMC015124A_c01 1114 0.0
>KMC015124A_C01 KMC015124A_c01
Length = 1106
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Minus
Query: 1 atgcaaggaggaggcgccgccgagggagaagctcttgatttcgaaccggaggacgatgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 atgcaaggaggaggcgccgccgagggagaagctcttgatttcgaaccggaggacgatgac 1010
Query: 61 ctcatggacgaggacggcgctcctgacgccgacgcttctccgcctcaccccaagctcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 ctcatggacgaggacggcgctcctgacgccgacgcttctccgcctcaccccaagctcaaa 950
Query: 121 tccgccatcacttccggcgctgctccctccctctccgcccctaaaaagaccaagggccgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 tccgccatcacttccggcgctgctccctccctctccgcccctaaaaagaccaagggccgt 890
Query: 181 ggtttccgccaggagactgacaccaaccgcaacaaccgcctctccggctctgatttcgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 ggtttccgccaggagactgacaccaaccgcaacaaccgcctctccggctctgatttcgac 830
Query: 241 tctctcaccaccgagggtggccctggccctcagagatccattgaaggatggattattctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tctctcaccaccgagggtggccctggccctcagagatccattgaaggatggattattctg 770
Query: 301 gtcactggggttcacgaggaggcgcaggaggatgatttgcaaaacgcttttggtgaatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gtcactggggttcacgaggaggcgcaggaggatgatttgcaaaacgcttttggtgaatac 710
Query: 361 ggagagattaagaacctgcatttgaatctcgatcgtcgcactggttttgtcaaaggttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ggagagattaagaacctgcatttgaatctcgatcgtcgcactggttttgtcaaaggttat 650
Query: 421 gcactgattgaatatgaacgtgctgaggaagctaaaaatgccatagagaatttgaatgga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gcactgattgaatatgaacgtgctgaggaagctaaaaatgccatagagaatttgaatgga 590
Query: 481 tctgagcttcttacccaaaacatttatgtcgactgggctttcagcagtgggcctattaat 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tctgagcttcttaccccaaacatttatgtcgactgggctttcagcagtgggcctattaat 530
Query: 541 gagtcaatcagaagaaagaatgctag 566
||||||||||||||||||||||||||
Sbjct: 529 gagtcaatcagaagaaagaatgctag 504
Score = 331 bits (167), Expect = 6e-91
Identities = 188/195 (96%)
Strand = Plus / Minus
Query: 604 ggccaactcgtgatcggcgctccaggagccctcgcaggagatattgatgtggtgtgtatt 663
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggcccactcgtgatcggcgctccaggagccctcgcaggagatattgatgtggtgtgtatt 445
Query: 664 ggtaacctgattgtgccgttgtgtgaactcttaaatgagcagtttgttttctattggtca 723
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 444 ggtaacctgattgtgcccttgtgtgaactcttaaatgagccgtttgttttctattggtcc 385
Query: 724 agaagtggaaattttttccaatacttgtgctcccccttcaggcaaaacacaccttggttg 783
||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||
Sbjct: 384 agaagtggaaattttttcccatacttgtgctcccccttcaggccaaacaccccttggttg 325
Query: 784 ctgaggattcttgtc 798
|||||||||||||||
Sbjct: 324 ctgaggattcttgtc 310
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2318
Number of Sequences: 8469
Number of extensions: 2318
Number of successful extensions: 621
Number of sequences better than 1.0e-03: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 2
length of query: 798
length of database: 5,164,774
effective HSP length: 16
effective length of query: 782
effective length of database: 5,029,270
effective search space: 3932889140
effective search space used: 3932889140
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)