Miyakogusa Predicted Gene
- chr2.CM0018.1270.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr2.CM0018.1270.nc - phase: 0
(3441 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC004106A_C01 KMC004106A_c01 252 2e-66
KMC011019A_C01 KMC011019A_c01 62 4e-09
>KMC004106A_C01 KMC004106A_c01
Length = 768
Score = 252 bits (127), Expect = 2e-66
Identities = 259/303 (85%)
Strand = Plus / Minus
Query: 3139 ctcatgataccaccaatcacgataatgatggttaacttgatcgcgatcgcagtcggcgtt 3198
|||||||||||||| ||||| || ||||||||||||||||| || || |||||||| ||
Sbjct: 767 ctcatgataccacccatcacaatcatgatggttaacttgatagcaattgcagtcggagtg 708
Query: 3199 agccgaaccatatacagtgtgataccacagtggagtcgtctgataggtggtgttttcttt 3258
||| | ||||||||||| ||||| |||||||| ||| || ||||||||||||||||
Sbjct: 707 agcaggaccatatacagcaccatacctcagtggagccgtttgctaggtggtgttttcttc 648
Query: 3259 agtttttgggtgttggctcatctctacccttttgcaaaaggtttgatgggaagaagaggg 3318
|| ||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 647 agcttttgggtgctgactcatctctacccttttgctaaaggtttgatgggaagaagaggg 588
Query: 3319 aggacacctaccattgtttttgtatggtcaggcctcatagccatcacaatctctcttttg 3378
||||||||||||||||||| ||| |||||||| |||||||| |||||||| || || |
Sbjct: 587 aggacacctaccattgtttatgtgtggtcaggtctcatagcaatcacaatatcactcctt 528
Query: 3379 tgggtggcaatcaacccccctgctggttctaaccaaattgggggttcattccagtttcca 3438
||||| |||||||| |||||| ||| | ||| | || || |||||||||||||| |||
Sbjct: 527 tgggttgcaatcaatccccctcaaggtgccaacgagataggtggttcattccagttccca 468
Query: 3439 tga 3441
|||
Sbjct: 467 tga 465
>KMC011019A_C01 KMC011019A_c01
Length = 577
Score = 61.9 bits (31), Expect = 4e-09
Identities = 97/119 (81%)
Strand = Plus / Minus
Query: 3247 ggtgttttctttagtttttgggtgttggctcatctctacccttttgcaaaaggtttgatg 3306
||||| ||||| || ||||||||| ||| |||||| || || |||||||| || | |||
Sbjct: 420 ggtgtgttcttcagcttttgggtgctggttcatctttatccatttgcaaaggggcttatg 361
Query: 3307 ggaagaagagggaggacacctaccattgtttttgtatggtcaggcctcatagccatcac 3365
||||||||||| | |||||| || ||||| ||||| ||||| || || ||| |||||||
Sbjct: 360 ggaagaagaggtaagacaccaacgattgtgtttgtttggtctggtcttatatccatcac 302
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,838
Number of Sequences: 8469
Number of extensions: 10838
Number of successful extensions: 2930
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2924
Number of HSP's gapped (non-prelim): 4
length of query: 3441
length of database: 5,164,774
effective HSP length: 17
effective length of query: 3424
effective length of database: 5,020,801
effective search space: 17191222624
effective search space used: 17191222624
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)